[rkward-users] [rkward - Open Discussion] Bug when using Annotations for illumina array

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https://sourceforge.net/forum/message.php?msg_id=4707562
By: daffydoc

Hello,

I write here to report a bug I had with Rkward, using bioconductor package
lumiHumanV1 to annotate an illumina array with GO categories

When I run the lines given in the lumiHumanV1GO help file, I get an extraordinary
long computation time (I let rkward running for more than 24 hours before I
decided to stop it). when running the same code directly from the R console
everything works perfectly it runs in only a few minutes.

I guess this comes from a bug from Rkward.

For any other task, rkward works fine on my computer


this might not be thee right place for bug report, if so could someone tell
me where I should write ?


Maxime


PS: the code that caused rkward to crash...

 # Convert to a list
    xx <- as.list(lumiHumanV1GO)
    # Remove all the NAs
    xx <- xx[!is.na(xx)]
    if(length(xx) > 0){
            # Try the firest one
            got <- xx[[1]]           
            got[[1]][["GOID"]]
            got[[1]][["Ontology"]]
            got[[1]][["Evidence"]]

    }


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