[rkward-devel] ggplot2

Sun Jun 19 12:49:00 UTC 2016

Dear Sir/Madam

I am using RKWard on Ubuntu Mate having used it a lot on Windows.  I don't seem to be able to install ggplot2 though.  I love RKWard, so I would hate not to be able to use it!

I am using R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

This is what I get.  Sorry it is so long, but I am not sure what you need and I am not a computer buff!

Many thanks

Edward

> install.packages("ggplot2", dependencies=TRUE)
Installing package into ‘/home/edward/.rkward/library’
(as ‘lib’ is unspecified)
also installing the dependencies ‘curl’, ‘openssl’, ‘stringr’, ‘httr’, ‘evaluate’, ‘gdtools’, ‘reshape2’, ‘covr’, ‘Hmisc’, ‘knitr’, ‘rmarkdown’, ‘svglite’

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/curl_0.9.7.tar.gz'
Content type 'application/x-gzip' length 263926 bytes (257 KB)
==================================================
downloaded 257 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/openssl_0.9.4.tar.gz'
Content type 'application/x-gzip' length 1165388 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/stringr_1.0.0.tar.gz'
Content type 'application/x-gzip' length 34880 bytes (34 KB)
==================================================
downloaded 34 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/httr_1.2.0.tar.gz'
Content type 'application/x-gzip' length 133324 bytes (130 KB)
==================================================
downloaded 130 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/evaluate_0.9.tar.gz'
Content type 'application/x-gzip' length 19165 bytes (18 KB)
==================================================
downloaded 18 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/gdtools_0.0.7.tar.gz'
Content type 'application/x-gzip' length 12494 bytes (12 KB)
==================================================
downloaded 12 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/reshape2_1.4.1.tar.gz'
Content type 'application/x-gzip' length 34693 bytes (33 KB)
==================================================
downloaded 33 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/covr_2.0.1.tar.gz'
Content type 'application/x-gzip' length 56202 bytes (54 KB)
==================================================
downloaded 54 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/Hmisc_3.17-4.tar.gz'
Content type 'application/x-gzip' length 647519 bytes (632 KB)
==================================================
downloaded 632 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/knitr_1.13.tar.gz'
Content type 'application/x-gzip' length 886610 bytes (865 KB)
==================================================
downloaded 865 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/rmarkdown_0.9.6.tar.gz'
Content type 'application/x-gzip' length 2013956 bytes (1.9 MB)
==================================================
downloaded 1.9 MB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/svglite_1.1.0.tar.gz'
Content type 'application/x-gzip' length 16176 bytes (15 KB)
==================================================
downloaded 15 KB

trying URL 'https://mirrors.ebi.ac.uk/CRAN/src/contrib/ggplot2_2.1.0.tar.gz'
Content type 'application/x-gzip' length 1571788 bytes (1.5 MB)
==================================================
downloaded 1.5 MB

* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lcurl
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
 * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
 * rpm: libcurl-devel (Fedora, CentOS, RHEL)
 * csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/home/edward/.rkward/library/curl’
* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked
Using PKG_CFLAGS=
Using PKG_LIBS=-lssl -lcrypto
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because openssl was not found. Try installing:
 * deb: libssl-dev (Debian, Ubuntu, etc)
 * rpm: openssl-devel (Fedora, CentOS, RHEL)
 * csw: libssl_dev (Solaris)
 * brew: openssl (Mac OSX)
If openssl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘openssl’
* removing ‘/home/edward/.rkward/library/openssl’
* installing *source* package ‘stringr’ ...
** package ‘stringr’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Error in library.dynam(lib, package, package.lib) : 
  shared object ‘stringi.so’ not found
ERROR: lazy loading failed for package ‘stringr’
* removing ‘/home/edward/.rkward/library/stringr’
* installing *source* package ‘gdtools’ ...
** package ‘gdtools’ successfully unpacked and MD5 sums checked
Package cairo was not found in the pkg-config search path.
Perhaps you should add the directory containing `cairo.pc'
to the PKG_CONFIG_PATH environment variable
No package 'cairo' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lcairo
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because cairo was not found. Try installing:
 * deb: libcairo-dev (Debian, Ubuntu)
 * rpm: cairo-devel (Fedora, CentOS, RHEL)
 * csw: libcairo_dev (Solaris)
 * brew: cairo (OSX)
If cairo is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a cairo.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘gdtools’
* removing ‘/home/edward/.rkward/library/gdtools’
ERROR: dependencies ‘curl’, ‘openssl’ are not available for package ‘httr’
* removing ‘/home/edward/.rkward/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘evaluate’
* removing ‘/home/edward/.rkward/library/evaluate’
ERROR: dependency ‘stringr’ is not available for package ‘reshape2’
* removing ‘/home/edward/.rkward/library/reshape2’
ERROR: dependency ‘gdtools’ is not available for package ‘svglite’
* removing ‘/home/edward/.rkward/library/svglite’
ERROR: dependency ‘httr’ is not available for package ‘covr’
* removing ‘/home/edward/.rkward/library/covr’
ERROR: dependencies ‘evaluate’, ‘stringr’ are not available for package ‘knitr’
* removing ‘/home/edward/.rkward/library/knitr’
ERROR: dependency ‘reshape2’ is not available for package ‘ggplot2’
* removing ‘/home/edward/.rkward/library/ggplot2’
ERROR: dependency ‘ggplot2’ is not available for package ‘Hmisc’
* removing ‘/home/edward/.rkward/library/Hmisc’
ERROR: dependency ‘knitr’ is not available for package ‘rmarkdown’
* removing ‘/home/edward/.rkward/library/rmarkdown’

The downloaded source packages are in
	‘/tmp/RtmpHhMFl9/downloaded_packages’
There were 13 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘curl’ had non-zero exit status
2: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘openssl’ had non-zero exit status
3: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘stringr’ had non-zero exit status
4: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘gdtools’ had non-zero exit status
5: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘httr’ had non-zero exit status
6: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘evaluate’ had non-zero exit status
7: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘reshape2’ had non-zero exit status
8: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘svglite’ had non-zero exit status
9: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘covr’ had non-zero exit status
10: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘knitr’ had non-zero exit status
11: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘ggplot2’ had non-zero exit status
12: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘Hmisc’ had non-zero exit status
13: In install.packages("ggplot2", dependencies = TRUE) :
  installation of package ‘rmarkdown’ had non-zero exit status

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