[rkward-devel] Bug report

[Mischa Vreeburg]

I tried to load several packages which have rJava as a dependency. About
half of them ended in an error. I got a caught segfault with invalid
permissions.
These packages failed loading:
library('cshapes')         #fail caught segfault invalid permissions
library('Deducer')         #fail caught segfault invalid permissions
library('JGR')             #fail caught segfault invalid permissions
library('RFreak')          #fail caught segfault invalid permissions
library('RNCBI')        #fail caught segfault invalid permissions
library('RNCBIAxis2Libs')    #fail caught segfault invalid permissions
library('RNCBIEUtilsLibs')    #fail caught segfault invalid permissions
library('colbycol')         #fail caught segfault invalid permissions
library('dismo')        #fail caught segfault invalid permissions
library('gWidgetsrJava')    #fail caught segfault invalid permissions
library('helloJavaWorld')    #fail caught segfault invalid permissions
library('iplots')        #fail caught segfault invalid permissions
library('rcdk')            #fail caught segfault invalid permissions
library('rcdklibs')        #fail caught segfault invalid permissions
library('spcosa')        #fail caught segfault invalid permissions
library('venneuler')        #fail caught segfault invalid permissions
library('xlsx')            #fail caught segfault invalid permissions
library('xlsxjars')        #fail caught segfault invalid permissions
library('gaggle')        #fail caught segfault invalid permissions
library('CADStat')        #fail caught segfault invalid permissions
library('RImageJ')         #fail caught segfault invalid permissions
library('RLadyBug')        #fail caught segfault invalid permissions
library('arulesNBMiner')     #fail caught segfault invalid permissions
library('farmR')         #fail caught segfault invalid permissions
library('gMCP')         #fail caught segfault invalid permissions
library('mutossGUI')        #fail caught segfault invalid permissions
library('scagnostics')        #fail caught segfault invalid permissions

These packages worked:
library('RJDBC')
library('aCGH.Spline')
library('ant')
library('dynGraph')
library('rJython')

I also had some problems loading the gWidgetsRGtk2 package and packages
which required that one.
list of packages that failed:
library('formatR')        #fail CTD
library('FAiR')            #fail R engine crashes/stops
library('QTLNetworkR')        #fail CTD
library('RGtk2Extras')        #fail R engine crashes/stops
library('fit4NM')        #fail CTD + crash report
library('iBUGS')        #fail CTD + crash report
library('playwith')        #fail R engine crashes/stops
library('BioIDMapper')        #fail CTD + crash report

Only package that loaded with gWidgetsRGtk2:
library('PKmodelFinder')

I'm using ubuntu lucid with the sun java library: sun-java-jre version
6.22-0ubuntu1~10.04 and as gtk2 engine libgtk2.0-0 version 2.20.1-0ubuntu2

I hope this will help you.
I really like your product
-- 
M. D. Vreeburg
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.kde.org/pipermail/rkward-devel/attachments/20101019/7f2a8230/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: rkward-20101019.kcrash
Type: application/octet-stream
Size: 24416 bytes
Desc: not available
URL: <http://mail.kde.org/pipermail/rkward-devel/attachments/20101019/7f2a8230/attachment.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: rkward-20101019(2).kcrash
Type: application/octet-stream
Size: 17582 bytes
Desc: not available
URL: <http://mail.kde.org/pipermail/rkward-devel/attachments/20101019/7f2a8230/attachment-0001.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: rkward-20101019(3).kcrash
Type: application/octet-stream
Size: 6403 bytes
Desc: not available
URL: <http://mail.kde.org/pipermail/rkward-devel/attachments/20101019/7f2a8230/attachment-0002.obj>