[RkWard-devel] Another preview, last call for testing

[Jacob Michaelson]

Okay Thomas, I added the line you specified, recompiled and  
reinstalled.  I'm testing the crash by running library(Biobase) -  
this then loads the required package "tools".  This time I loaded  
"tools" first, with no crashes.  Then I loaded Biobase and it crashed  
in the typical manner.

The output:

Trace: rkconsole.cpp - function submitCommand line 144
Trace: rkconsole.cpp - function currentCommand line 117
Trace: rkconsole.cpp - function addCommandToHistory line 296
Trace: rkconsole.cpp - function currentCommand line 117
Trace: rcommand.cpp - function RCommand line 27
Trace: rinterface.cpp - function issueCommand line 200
Trace: rcommandstack.cpp - function issueCommand line 38
Trace: rkconsole.cpp - function setDoingCommand line 358
Trace: rcommandstack.cpp - function pop line 105
Trace: rthread.cpp - function doCommand line 128
running command: library(tools)
Trace: rinterface.cpp - function customEvent line 127
Trace: rkward.cpp - function setRStatus line 654
Trace: rinterface.cpp - function customEvent line 127
Trace: rkwatch.cpp - function addInput line 62
Trace: rksettingsmodulewatch.cpp - function shouldShowInput line 41
Trace: rinterface.cpp - function customEvent line 127
Trace: rkwatch.cpp - function addOutput line 98
Trace: rksettingsmodulewatch.cpp - function shouldShowInput line 41
Trace: rkwatch.cpp - function addInputNoCheck line 72
Trace: rksettingsmodulewatch.cpp - function shouldRaiseWindow line 98
Trace: rkwatch.cpp - function linesAdded line 154
Trace: rksettingsmodulewatch.cpp - function shouldShowOutput line 61
Trace: rcommand.cpp - function output line 82
Trace: rcommand.cpp - function error line 70
Trace: rksettingsmodulewatch.cpp - function shouldRaiseWindow line 98
Trace: rkwatch.cpp - function linesAdded line 154
Trace: rcommand.cpp - function finished line 62
Trace: rkconsole.cpp - function rCommandDone line 196
Trace: rkconsole.cpp - function tryNextInBatch line 252
Trace: rkconsole.cpp - function cursorAtTheEnd line 132
Trace: rkconsole.cpp - function setDoingCommand line 358
Trace: rcommand.cpp - function ~RCommand line 47
Trace: rinterface.cpp - function customEvent line 127
Trace: rkward.cpp - function setRStatus line 654
Trace: rkconsole.cpp - function submitCommand line 144
Trace: rkconsole.cpp - function currentCommand line 117
Trace: rkconsole.cpp - function addCommandToHistory line 296
Trace: rkconsole.cpp - function currentCommand line 117
Trace: rcommand.cpp - function RCommand line 27
Trace: rinterface.cpp - function issueCommand line 200
Trace: rcommandstack.cpp - function issueCommand line 38
Trace: rkconsole.cpp - function setDoingCommand line 358
Trace: rcommandstack.cpp - function pop line 105
Trace: rthread.cpp - function doCommand line 128
running command: library(Biobase)
Trace: rinterface.cpp - function customEvent line 127
Trace: rkward.cpp - function setRStatus line 654
Trace: rinterface.cpp - function customEvent line 127
Trace: rkwatch.cpp - function addInput line 62
Trace: rksettingsmodulewatch.cpp - function shouldShowInput line 41
Bus error
$

I don't recall whether I've ever successfully run rkward (v. 0.3.2,  
etc.) without this bug on FreeBSD (I've run rkward on a lot of  
different platforms and sometimes my memory gets fuzzy).

Please let me know if I can do anything else.

--Jake


On Nov 6, 2005, at 1:11 PM, Thomas Friedrichsmeier wrote:

>> Thomas, I recompiled with your suggestions and it still crashed with
>> the following output:
>
> Ok. I was afraid so. Could you maybe do one additional test: Put a  
> '//' at the
> beginning of line 372 in rthread.cpp i.e. it should read:
>
> //	connectCallbacks ();
>
> This is a slightly more radical version of the previous attempt.  
> Basically,
> this cuts off most communication between R and rkward entirely. I'd  
> simply
> like to see, whether the problem might be anywhere in there (this  
> was one of
> the major changes between 0.3.2 and 0.3.3, and you said, with 0.3.2  
> you did
> not get the crash, right?).
>
> Thanks!
> Thomas
>
>
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