[kdepim-users] MySQL/Akonadi broken on Kubuntu with KDE 4.4

Thu Feb 11 23:34:41 GMT 2010

KmaIl won't start because the akonadi server won't start, because
mysql won't start because Innodb seems to be broken.

I followed the kde links in the akonadi self test dialog, but nothing
there helped.

MySQL put out InnoDB errors and directed me to
http://dev.mysql.com/doc/refman/5.1/en/error-creating-innodb.html
which offered some suggestions, that aren't easy to follow for someone
unfamiliar with MySQL..

Here are some of the errors.  All help is appreciated.  I am stuck
with webmail until I can fix this.

Akonadi Server Self-Test Report
===============================

Test 1:  SUCCESS
--------

Database driver found.
Details: The QtSQL driver 'QMYSQL' is required by your current Akonadi
server configuration and was found on your system.

File content of '/home/arthur/.config/akonadi/akonadiserverrc':
[%General]
Driver=QMYSQL
SizeThreshold=4096
ExternalPayload=false

[QMYSQL]
Name=akonadi
User=
Password=
Options="UNIX_SOCKET=/home/arthur/.local/share/akonadi/db_misc/mysql.socket"
ServerPath=/usr/sbin/mysqld-akonadi
StartServer=true
Host=

[Debug]
Tracer=null

Test 2:  SUCCESS
--------

MySQL server found.
Details: You currently have configured Akonadi to use the MySQL server
'/usr/sbin/mysqld-akonadi'.
Make sure you have the MySQL server installed, set the correct path
and ensure you have the necessary read and execution rights on the
server executable. The server executable is typically called 'mysqld',
its locations varies depending on the distribution.

Test 3:  SUCCESS
--------

MySQL server is executable.
Details: MySQL server found: /usr/sbin/mysqld-akonadi  Ver
5.1.37-1ubuntu5 for debian-linux-gnu on i486 ((Ubuntu))

Test 4:  ERROR
--------

MySQL server log contains errors.
Details: The MySQL server error log file '<a
href='/home/arthur/.local/share/akonadi/db_data/mysql.err'>/home/arthur/.local/share/akonadi/db_data/mysql.err</a>'
contains errors.

File content of '/home/arthur/.local/share/akonadi/db_data/mysql.err':
100211 15:26:47 [Note] Plugin 'FEDERATED' is disabled.
InnoDB: No valid checkpoint found.
InnoDB: If this error appears when you are creating an InnoDB database,
InnoDB: the problem may be that during an earlier attempt you managed
InnoDB: to create the InnoDB data files, but log file creation failed.
InnoDB: If that is the case, please refer to
InnoDB: http://dev.mysql.com/doc/refman/5.1/en/error-creating-innodb.html
100211 15:26:47 [ERROR] Plugin 'InnoDB' init function returned error.
100211 15:26:47 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
100211 15:26:47 [ERROR] Unknown/unsupported table type: innodb
100211 15:26:47 [ERROR] Aborting

100211 15:26:47 [Warning] Forcing shutdown of 1 plugins
100211 15:26:47 [Note] /usr/sbin/mysqld-akonadi: Shutdown complete

Test 5:  SUCCESS
--------

MySQL server default configuration found.
Details: The default configuration for the MySQL server was found and
is readable at <a
href='/etc/akonadi/mysql-global.conf'>/etc/akonadi/mysql-global.conf</a>.

File content of '/etc/akonadi/mysql-global.conf':
#
# Global Akonadi MySQL server settings,
# These settings can be adjusted using $HOME/.config/akonadi/mysql-local.conf
#
# Based on advice by Kris KÃ¶hntopp <kris at mysql.com>
#
[mysqld]
skip_grant_tables
skip_networking

# strict query parsing/interpretation
# TODO: make Akonadi work with those settings enabled
#sql_mode=strict_trans_tables,strict_all_tables,strict_error_for_division_by_zero,no_auto_create_user,no_auto_value_on_zero,no_engine_substitution,no_zero_date,no_zero_in_date,only_full_group_by,pipes_as_concat
#sql_mode=strict_trans_tables

# use InnoDB for transactions and better crash recovery
default_storage_engine=innodb
# case-insensitive table names, avoids trouble on windows
lower_case_table_names=1
character_set_server=latin1
collation_server=latin1_general_ci
table_cache=200
thread_cache_size=3
log_bin=mysql-bin
expire_logs_days=3
#sync_bin_log=0
# error log file name, relative to datadir
log_error=mysql.err
log_warnings=2
# log all queries, useful for debugging but generates an enormous amount of data
#log=mysql.full
# log queries slower than n seconds, log file name relative to datadir
(for debugging only)
#log_slow_queries=mysql.slow
#long_query_time=1
# log queries not using indices, debug only, disable for production use
#log_queries_not_using_indexes=1
# maximum blob size
max_allowed_packet=32M
max_connections=256
# makes sense when having the same query multiple times
# makes no sense with prepared statements and/or transactions
query_cache_type=0
query_cache_size=0

innodb_file_per_table=1
innodb_log_buffer_size=1M
innodb_additional_mem_pool_size=1M
# messure database size and adjust
# SELECT sum(data_length) as bla, sum(index_length) as blub FROM
information_schema.tables WHERE table_schema not in ("mysql",
"information_schema");
innodb_buffer_pool_size=80M
# size of average write burst, keep Innob_log_waits small, keep
Innodb_buffer_pool_wait_free small (see show global status like
"inno%", show global variables)
innodb_log_file_size=64M
innodb_flush_log_at_trx_commit=2

Test 6:  SKIP
--------

MySQL server custom configuration not available.
Details: The custom configuration for the MySQL server was not found
but is optional.

Test 7:  SUCCESS
--------

MySQL server configuration is usable.
Details: The MySQL server configuration was found at <a
href='/home/arthur/.local/share/akonadi/mysql.conf'>/home/arthur/.local/share/akonadi/mysql.conf</a>
and is readable.

File content of '/home/arthur/.local/share/akonadi/mysql.conf':
#
# Global Akonadi MySQL server settings,
# These settings can be adjusted using $HOME/.config/akonadi/mysql-local.conf
#
# Based on advice by Kris KÃ¶hntopp <kris at mysql.com>
#
[mysqld]
skip_grant_tables
skip_networking

# strict query parsing/interpretation
# TODO: make Akonadi work with those settings enabled
#sql_mode=strict_trans_tables,strict_all_tables,strict_error_for_division_by_zero,no_auto_create_user,no_auto_value_on_zero,no_engine_substitution,no_zero_date,no_zero_in_date,only_full_group_by,pipes_as_concat
#sql_mode=strict_trans_tables

# use InnoDB for transactions and better crash recovery
default_storage_engine=innodb
# case-insensitive table names, avoids trouble on windows
lower_case_table_names=1
character_set_server=latin1
collation_server=latin1_general_ci
table_cache=200
thread_cache_size=3
log_bin=mysql-bin
expire_logs_days=3
#sync_bin_log=0
# error log file name, relative to datadir
log_error=mysql.err
log_warnings=2
# log all queries, useful for debugging but generates an enormous amount of data
#log=mysql.full
# log queries slower than n seconds, log file name relative to datadir
(for debugging only)
#log_slow_queries=mysql.slow
#long_query_time=1
# log queries not using indices, debug only, disable for production use
#log_queries_not_using_indexes=1
# maximum blob size
max_allowed_packet=32M
max_connections=256
# makes sense when having the same query multiple times
# makes no sense with prepared statements and/or transactions
query_cache_type=0
query_cache_size=0

innodb_file_per_table=1
innodb_log_buffer_size=1M
innodb_additional_mem_pool_size=1M
# messure database size and adjust
# SELECT sum(data_length) as bla, sum(index_length) as blub FROM
information_schema.tables WHERE table_schema not in ("mysql",
"information_schema");
innodb_buffer_pool_size=80M
# size of average write burst, keep Innob_log_waits small, keep
Innodb_buffer_pool_wait_free small (see show global status like
"inno%", show global variables)
innodb_log_file_size=64M
innodb_flush_log_at_trx_commit=2

Test 8:  SUCCESS
--------

akonadictl found and usable
Details: The program '/usr/bin/akonadictl' to control the Akonadi
server was found and could be executed successfully.
Result:
Akonadi 1.3.1

Test 9:  ERROR
--------

Akonadi control process not registered at D-Bus.
Details: The Akonadi control process is not registered at D-Bus which
typically means it was not started or encountered a fatal error during
startup.

Test 10:  ERROR
--------

Akonadi server process not registered at D-Bus.
Details: The Akonadi server process is not registered at D-Bus which
typically means it was not started or encountered a fatal error during
startup.

Test 11:  ERROR
--------

Nepomuk search service not registered at D-Bus.
Details: The Nepomuk search service is not registered at D-Bus which
typically means it was not started or encountered a fatal error during
startup.

Test 12:  SKIP
--------

Protocol version check not possible.
Details: Without a connection to the server it is not possible to
check if the protocol version meets the requirements.

Test 13:  ERROR
--------

No resource agents found.
Details: No resource agents have been found, Akonadi is not usable
without at least one. This usually means that no resource agents are
installed or that there is a setup problem. The following paths have
been searched: '/usr/share/akonadi/agents /usr/share/akonadi/agents'.
The XDG_DATA_DIRS environment variable is set to
'/usr/share:/usr/share:/usr/local/share', make sure this includes all
paths where Akonadi agents are installed to.

Directory listing of '/usr/share/akonadi/agents':
birthdaysresource.desktop
contactsresource.desktop
icalresource.desktop
imapresource.desktop
kabcresource.desktop
kcalresource.desktop
knutresource.desktop
kolabproxyresource.desktop
localbookmarksresource.desktop
maildirresource.desktop
maildispatcheragent.desktop
mboxresource.desktop
microblog.desktop
mtdummyresource.desktop
nepomukcalendarfeeder.desktop
nepomukcontactfeeder.desktop
nepomuktagresource.desktop
nntpresource.desktop
notesresource.desktop
pop3resource.desktop
vcarddirresource.desktop
vcardresource.desktop
Directory listing of '/usr/share/akonadi/agents':
birthdaysresource.desktop
contactsresource.desktop
icalresource.desktop
imapresource.desktop
kabcresource.desktop
kcalresource.desktop
knutresource.desktop
kolabproxyresource.desktop
localbookmarksresource.desktop
maildirresource.desktop
maildispatcheragent.desktop
mboxresource.desktop
microblog.desktop
mtdummyresource.desktop
nepomukcalendarfeeder.desktop
nepomukcontactfeeder.desktop
nepomuktagresource.desktop
nntpresource.desktop
notesresource.desktop
pop3resource.desktop
vcarddirresource.desktop
vcardresource.desktop

Environment variable XDG_DATA_DIRS is set to
'/usr/share:/usr/share:/usr/local/share'

Test 14:  ERROR
--------

Current Akonadi server error log found.
Details: The Akonadi server did report error during startup into <a
href='/home/arthur/.local/share/akonadi/akonadiserver.error'>/home/arthur/.local/share/akonadi/akonadiserver.error</a>.

File content of '/home/arthur/.local/share/akonadi/akonadiserver.error':
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld-akonadi"
arguments: ("--defaults-file=/home/arthur/.local/share/akonadi//mysql.conf",
"--datadir=/home/arthur/.local/share/akonadi/db_data/",
"--socket=/home/arthur/.local/share/akonadi/db_misc/mysql.socket")
stdout: ""
stderr: ""
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver(_Z11akBacktracev+0x35) [0x8052055]
1: akonadiserver [0x8052526]
2: [0xb78a6400]
3: [0xb78a6430]
4: /lib/tls/i686/cmov/libc.so.6(gsignal+0x51) [0xb717e4d1]
5: /lib/tls/i686/cmov/libc.so.6(abort+0x182) [0xb7181932]
6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb74f82bc]
7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x80535a4]
8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb75917ae]
9: /usr/lib/libQtCore.so.4 [0xb75a4ce5]
10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb75a61fd]
11: akonadiserver(_ZN6QDebugD1Ev+0x46) [0x804dd56]
12: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer25startMysqlDatabaseProcessEv+0x1a63)
[0xb7765f93]
13: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0x263)
[0xb776b2d3]
14: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServerC1EP7QObject+0x7d)
[0xb776b56d]
15: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer8instanceEv+0x58)
[0xb776ca28]
16: akonadiserver(main+0x32c) [0x804d2ac]
17: /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe6) [0xb716ab56]
18: akonadiserver [0x804ceb1]
]
"

Test 15:  ERROR
--------

Previous Akonadi server error log found.
Details: The Akonadi server did report error during its previous
startup into <a
href='/home/arthur/.local/share/akonadi/akonadiserver.error.old'>/home/arthur/.local/share/akonadi/akonadiserver.error.old</a>.

File content of '/home/arthur/.local/share/akonadi/akonadiserver.error.old':
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld-akonadi"
arguments: ("--defaults-file=/home/arthur/.local/share/akonadi//mysql.conf",
"--datadir=/home/arthur/.local/share/akonadi/db_data/",
"--socket=/home/arthur/.local/share/akonadi/db_misc/mysql.socket")
stdout: ""
stderr: ""
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver(_Z11akBacktracev+0x35) [0x8052055]
1: akonadiserver [0x8052526]
2: [0xb7865400]
3: [0xb7865430]
4: /lib/tls/i686/cmov/libc.so.6(gsignal+0x51) [0xb713d4d1]
5: /lib/tls/i686/cmov/libc.so.6(abort+0x182) [0xb7140932]
6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb74b72bc]
7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x80535a4]
8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb75507ae]
9: /usr/lib/libQtCore.so.4 [0xb7563ce5]
10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb75651fd]
11: akonadiserver(_ZN6QDebugD1Ev+0x46) [0x804dd56]
12: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer25startMysqlDatabaseProcessEv+0x1a63)
[0xb7724f93]
13: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0x263)
[0xb772a2d3]
14: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServerC1EP7QObject+0x7d)
[0xb772a56d]
15: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer8instanceEv+0x58)
[0xb772ba28]
16: akonadiserver(main+0x32c) [0x804d2ac]
17: /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe6) [0xb7129b56]
18: akonadiserver [0x804ceb1]
]
"

Test 16:  SUCCESS
--------

No current Akonadi control error log found.
Details: The Akonadi control process did not report any errors during
its current startup.

Test 17:  SUCCESS
--------

No previous Akonadi control error log found.
Details: The Akonadi control process did not report any errors during
its previous startup.

akonadiserver.error.old
================
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld-akonadi"
arguments: ("--defaults-file=/home/arthur/.local/share/akonadi//mysql.conf",
"--datadir=/home/arthur/.local/share/akonadi/db_data/",
"--socket=/home/arthur/.local/share/akonadi/db_misc/mysql.socket")
stdout: ""
stderr: ""
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver(_Z11akBacktracev+0x35) [0x8052055]
1: akonadiserver [0x8052526]
2: [0xb7865400]
3: [0xb7865430]
4: /lib/tls/i686/cmov/libc.so.6(gsignal+0x51) [0xb713d4d1]
5: /lib/tls/i686/cmov/libc.so.6(abort+0x182) [0xb7140932]
6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb74b72bc]
7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x80535a4]
8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb75507ae]
9: /usr/lib/libQtCore.so.4 [0xb7563ce5]
10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb75651fd]
11: akonadiserver(_ZN6QDebugD1Ev+0x46) [0x804dd56]
12: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer25startMysqlDatabaseProcessEv+0x1a63)
[0xb7724f93]
13: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0x263)
[0xb772a2d3]
14: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServerC1EP7QObject+0x7d)
[0xb772a56d]
15: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer8instanceEv+0x58)
[0xb772ba28]
16: akonadiserver(main+0x32c) [0x804d2ac]
17: /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe6) [0xb7129b56]
18: akonadiserver [0x804ceb1]
]
"
akonadiserver.error
==============
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld-akonadi"
arguments: ("--defaults-file=/home/arthur/.local/share/akonadi//mysql.conf",
"--datadir=/home/arthur/.local/share/akonadi/db_data/",
"--socket=/home/arthur/.local/share/akonadi/db_misc/mysql.socket")
stdout: ""
stderr: ""
exit code: 1
process error: "Unknown error"
"[
0: akonadiserver(_Z11akBacktracev+0x35) [0x8052055]
1: akonadiserver [0x8052526]
2: [0xb7865400]
3: [0xb7865430]
4: /lib/tls/i686/cmov/libc.so.6(gsignal+0x51) [0xb713d4d1]
5: /lib/tls/i686/cmov/libc.so.6(abort+0x182) [0xb7140932]
6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb74b72bc]
7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x80535a4]
8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb75507ae]
9: /usr/lib/libQtCore.so.4 [0xb7563ce5]
10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb75651fd]
11: akonadiserver(_ZN6QDebugD1Ev+0x46) [0x804dd56]
12: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer25startMysqlDatabaseProcessEv+0x1a63)
[0xb7724f93]
13: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0x263)
[0xb772a2d3]
14: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServerC1EP7QObject+0x7d)
[0xb772a56d]
15: /usr/lib/libakonadiprivate.so.1(_ZN7Akonadi13AkonadiServer8instanceEv+0x58)
[0xb772ba28]
16: akonadiserver(main+0x32c) [0x804d2ac]
17: /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe6) [0xb7129b56]
18: akonadiserver [0x804ceb1]
]
"
mysql.err
=======
100211 15:26:47 [Note] Plugin 'FEDERATED' is disabled.
InnoDB: No valid checkpoint found.
InnoDB: If this error appears when you are creating an InnoDB database,
InnoDB: the problem may be that during an earlier attempt you managed
InnoDB: to create the InnoDB data files, but log file creation failed.
InnoDB: If that is the case, please refer to
InnoDB: http://dev.mysql.com/doc/refman/5.1/en/error-creating-innodb.html
100211 15:26:47 [ERROR] Plugin 'InnoDB' init function returned error.
100211 15:26:47 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
100211 15:26:47 [ERROR] Unknown/unsupported table type: innodb
100211 15:26:47 [ERROR] Aborting

100211 15:26:47 [Warning] Forcing shutdown of 1 plugins
100211 15:26:47 [Note] /usr/sbin/mysqld-akonadi: Shutdown complete

Thanks.

-- 
artAlexion
sent unsigned from webmail interface
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