[rkward-users] [rkward - Open Discussion] RE: Bug when using Annotations for illumina a

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By: tfry

Yes, after installing lumiHumanV1 I can see why it does not fail while loading.
This is because all the objects that cause the problem in lumiHumanV1GO are
inside another environment, which RKWard will not investigate by default. You
could - theoretically - avoid the hangup by making sure the large list never
exists in a place where RKWard would see it, e.g. by wrapping a "local({...})"
around the code in question. Of course this would only make sense, if the end
result of your computation is a more managable dataset, that you can then
assign/return to globalenv(). (Generally objects with many rows are fine (e.g.
data.frame's), only large lists / environments are a problem).

So, indeed, I guess for now the only viable solution is to use plain R for such
tasks. I'll keep the problem in mind, and I have some basic ideas on how to
fix this, but as mentionend, this is going to take some time.

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