[rkward-cvs] SF.net SVN: rkward:[4038] branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted
m-eik at users.sourceforge.net
m-eik at users.sourceforge.net
Sat Nov 19 13:53:53 UTC 2011
Revision: 4038
http://rkward.svn.sourceforge.net/rkward/?rev=4038&view=rev
Author: m-eik
Date: 2011-11-19 13:53:52 +0000 (Sat, 19 Nov 2011)
Log Message:
-----------
JSS paper: re-arranged figures, minor corrections to .bib data
Modified Paths:
--------------
branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/GUI_elements.tex
branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/background.tex
branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/example_session.tex
branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/sources.bib
Modified: branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/GUI_elements.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/GUI_elements.tex 2011-11-18 13:56:02 UTC (rev 4037)
+++ branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/GUI_elements.tex 2011-11-19 13:53:52 UTC (rev 4038)
@@ -19,18 +19,6 @@
visualization features (see Section~\ref{sec:analyzing_data}) for which \pkg{RKWard} provides a GUI
interface.
-\begin{figure}[b!]
- \centering
- \includegraphics[width=15.450cm]{./figures/main_window.png}
- \caption{Default \pkg{RKWard} main window after start up.
-A) Menu bar and toolbar, B) tool panel showing workspace browser, C) document view area, showing
-different documents (welcome message, \code{data.frame} ``my.data'', ``mean'' help page, \proglang{R}
-script ``demo.R''), D) tool panel showing embedded \proglang{R} console, and E) status bar with an option to
-stop running processes. Panels B and D can be resized or collapsed. The red border around B indicates that the
-workspace browser is the active interface element.}
- \label{fig:main_window}
-\end{figure}
-
A status bar is shown at the bottom of the window (Figure~\ref{fig:main_window}E). It displays (from
right to left) a ``Stop''-button to interrupt the current computations,
the status of the \proglang{R} engine (busy or idle), the
@@ -75,6 +63,18 @@
window.
}.
+\begin{figure}[hb!]
+ \centering
+ \includegraphics[width=15.450cm]{./figures/main_window.png}
+ \caption{Default \pkg{RKWard} main window after start up.
+A) Menu bar and toolbar, B) tool panel showing workspace browser, C) document view area, showing
+different documents (welcome message, \code{data.frame} ``my.data'', ``mean'' help page, \proglang{R}
+script ``demo.R''), D) tool panel showing embedded \proglang{R} console, and E) status bar with an option to
+stop running processes. Panels B and D can be resized or collapsed. The red border around B indicates that the
+workspace browser is the active interface element.}
+ \label{fig:main_window}
+\end{figure}
+
All key bindings can be configured from the GUI via ``Settings$\rightarrow$Configure Shortcuts''.
However, for technical reasons only the shortcuts of currently active components
will be listed. Thus, for example, to
@@ -153,6 +153,15 @@
The editor automatically saves snapshots of the
currently edited files at configurable intervals.
+\begin{figure}[ht!]
+ \centering
+ \includegraphics[width=15.5cm]{./figures/code_hinting.png}
+ \caption{Code hinting features of the script editor. The script editor is able to hint A) \proglang{R} object names
+and B) function arguments.}
+ \label{fig:code_hinting}
+\end{figure}
+
+\medskip
For interaction with \proglang{R}, the editor has
predefined shortcuts (and toolbar icons) for submitting the current line, the current
selection, predefined blocks, or the entire document to the
@@ -171,16 +180,8 @@
for inclusion in an \proglang{R} script, optionally
transforming it in advance (Figure~\ref{fig:special_paste}).
-\begin{figure}[t!]
+\begin{figure}[hb]
\centering
- \includegraphics[width=15.5cm]{./figures/code_hinting.png}
- \caption{Code hinting features of the script editor. The script editor is able to hint A) \proglang{R} object names
-and B) function arguments.}
- \label{fig:code_hinting}
-\end{figure}
-
-\begin{figure}[t!]
- \centering
\includegraphics[width=9.0cm]{./figures/special_paste.png}
\caption{Paste special dialog. This tool allows to paste data (e.\,g., tabular, text) from the clipboard, directly to an
\proglang{R} script and therefore accelerates the work process with data from different sources
@@ -189,6 +190,7 @@
\label{fig:special_paste}
\end{figure}
+\newpage
Script editor windows can be created by opening an existing
\proglang{R} script file from the file browser, the
``File'' menu, or by creating a new empty script. It can
@@ -234,19 +236,6 @@
\proglang{R} code, the function \code{rk.edit()} can be used.
Figure~\ref{fig:data_editors} shows multiple \code{data.frame}s open for editing.
-\begin{figure}[b!]
- \centering
- \includegraphics[width=15.5cm]{./figures/data_editors.png}
- \caption{\pkg{RKWard} with several \code{data.frame}s in use at the same time. A)
- One \code{data.frame} (\code{CO2} data of the \pkg{datasets} package) is opened for editing in the main window. Two further \code{data.frame}s
- are opened in the background in tabs.
- B) Another \code{data.frame} (\code{ChickWeight}) is opened in a detached window.
- C) \proglang{R}'s standard data editing features (e.\,g., \code{fix()}, \code{edit()})
- are also usable in \pkg{RKWard}. In this example \code{fix(DNase)}
- was invoked from the console (arrow).}
- \label{fig:data_editors}
-\end{figure}
-
Metadata on each column of a \code{data.frame} (i.\,e., name of the column, data
type, and potentially data labels) is shown in the upper portion of
the data editor, and can be manipulated there, while the data itself is
@@ -274,6 +263,19 @@
user can manually convert the storage mode of a column by simply
selecting a different data type in the ``Type'' row of the meta information.
+\begin{figure}[ht]
+ \centering
+ \includegraphics[width=15.5cm]{./figures/data_editors.png}
+ \caption{\pkg{RKWard} with several \code{data.frame}s in use at the same time. A)
+ One \code{data.frame} (\code{CO2} data of the \pkg{datasets} package) is opened for editing in the main window. Two further \code{data.frame}s
+ are opened in the background in tabs.
+ B) Another \code{data.frame} (\code{ChickWeight}) is opened in a detached window.
+ C) \proglang{R}'s standard data editing features (e.\,g., \code{fix()}, \code{edit()})
+ are also usable in \pkg{RKWard}. In this example \code{fix(DNase)}
+ was invoked from the console (arrow).}
+ \label{fig:data_editors}
+\end{figure}
+
The data editor supports insertion and deletion of rows or columns at
arbitrary positions. Rows (columns) can also be added at the bottom
(right) by simply entering data into the trailing row (column) shown in
@@ -328,7 +330,14 @@
it is required to specify a file before the dialog can proceed.
Further options are available from the tabbed pages of the central area.
-\begin{figure}[t!]
+The right-side area is common to all data handling
+dialogs. Here the ``Submit'' button is used
+to start the import action. It is enabled once all required
+settings have been made, i.\,e., in this case, once a file name has been
+selected. The ``Close'' button will close the
+dialog without taking any action.
+
+\begin{figure}[hb!]
\centering
\includegraphics[width=14.99cm]{./figures/CSV_import.png}
\caption{General data import dialog. Useful defaults for a variety of formats can
@@ -338,13 +347,6 @@
\label{fig:CSV_import}
\end{figure}
-The right-side area is common to all data handling
-dialogs. Here the ``Submit'' button is used
-to start the import action. It is enabled once all required
-settings have been made, i.\,e., in this case, once a file name has been
-selected. The ``Close'' button will close the
-dialog without taking any action.
-
The bottom area optionally shows the \proglang{R}
code corresponding to the current settings which will be run
upon pressing the ``Submit'' button (see Section~\ref{sec:importing_data} for generated \proglang{R} code).
@@ -372,6 +374,18 @@
and adding a grid to an existing plot
(works on only certain types of plots).
+\begin{figure}[ht!]
+ \centering
+ \includegraphics{./figures/plot_history_cropped.png}
+ \caption{On{}-screen graphics device window in \pkg{RKWard}. The plot history is
+ available as a drop-down list, allowing to jump directly to a previous
+ plot. In this example, five different plots were performed on the same data
+ set of a random sample (\code{rnorm()}). The plot can be
+ exported via ``Device$\rightarrow$Export'' as described in Section~\ref{sec:create_plot}.
+}
+ \label{fig:plot_history}
+\end{figure}
+
Further, a history mechanism is provided,
which stores created plots automatically and allows to navigate
back to earlier plots (Figure~\ref{fig:plot_history}).
@@ -387,18 +401,6 @@
back to the plot history. In addition, duplicating or closing a device
window records any unsaved plots to the history.
-\begin{figure}[t!]
- \centering
- \includegraphics{./figures/plot_history_cropped.png}
- \caption{On{}-screen graphics device window in \pkg{RKWard}. The plot history is
- available as a drop-down list, allowing to jump directly to a previous
- plot. In this example, five different plots were performed on the same data
- set of a random sample (\code{rnorm()}). The plot can be
- exported via ``Device$\rightarrow$Export'' as described in Section~\ref{sec:create_plot}.
-}
- \label{fig:plot_history}
-\end{figure}
-
Further, \pkg{RKWard} provides access to different plotting functions using GUI dialogs,
available from the ``Plots'' menu. Wherever appropriate, \pkg{RKWard} supports a ``plot
preview'' feature. When the ``Preview'' box of
@@ -442,21 +444,6 @@
data, providing benefits similar to, for example, the automated report generation
available from \pkg{RreportGenerator} \citep{RaffelsbergerW2008}.
-\begin{figure}[t!]
- \centering
- \includegraphics[width=15.5cm]{./figures/results_output_cropped.png}
- \caption{Sample contents of the output window. Upper portion: Result of analyzing sample data (from the
-\code{DNase} and \code{ChickWeight}
- datasets of the \pkg{datasets} package) in the ``Descriptive Statistics'' plugin. Standard elements of
- plugin output include a standardized header, and a ``Run again''-link, which allows to repeat the
- analysis with identical or similar parameters. Lower portion: A custom heading added using the
- \code{rk.header()} function, and a short transcript of R code with corresponding output.}
-% TF: Stefan: I've removed the bit below. It was not really designed to allow this, and for the more complex plugins, this is fairly useless,
-% since only a fraction of the options will fit in the status bar:
-% (Details of the previous analysis are shown in the status bar when the mouse pointer hovers over the ``Run again''-link)
- \label{fig:results_output}
-\end{figure}
-
The formatting of output is kept to a minimum. In particular,
\pkg{RKWard} is very reluctant to round numerical results for the sake of a
pretty output. Rather, the focus is on making the results easily
@@ -490,6 +477,21 @@
the \pkg{RKWard} output window, including syntax highlighting (see the lower portion of
Figure~\ref{fig:results_output}).
+\begin{figure}[hb!]
+ \centering
+ \includegraphics[width=15.5cm]{./figures/results_output_cropped.png}
+ \caption{Sample contents of the output window. Upper portion: Result of analyzing sample data (from the
+\code{DNase} and \code{ChickWeight}
+ datasets of the \pkg{datasets} package) in the ``Descriptive Statistics'' plugin. Standard elements of
+ plugin output include a standardized header, and a ``Run again''-link, which allows to repeat the
+ analysis with identical or similar parameters. Lower portion: A custom heading added using the
+ \code{rk.header()} function, and a short transcript of R code with corresponding output.}
+% TF: Stefan: I've removed the bit below. It was not really designed to allow this, and for the more complex plugins, this is fairly useless,
+% since only a fraction of the options will fit in the status bar:
+% (Details of the previous analysis are shown in the status bar when the mouse pointer hovers over the ``Run again''-link)
+ \label{fig:results_output}
+\end{figure}
+
\subsection{Package management}
\label{sec:package_management}
The number of \proglang{R} packages available from the comprehensive \proglang{R} archive
Modified: branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/background.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/background.tex 2011-11-18 13:56:02 UTC (rev 4037)
+++ branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/background.tex 2011-11-19 13:53:52 UTC (rev 4038)
@@ -88,7 +88,13 @@
(\url{http://rkward.sourceforge.net/}). Selected key milestones of the development of \pkg{RKWard} are
visualized in Figure~\ref{fig:timeline}.
-\begin{figure}[b!]
+In this paper we will give an overview over the installation process (Section~\ref{sec:installing_starting_RKWard}), the main GUI elements and
+features of \pkg{RKWard} (Section~\ref{sec:user_interface}), and closing by a short example
+of a simple \pkg{RKWard} session (Section~\ref{sec:using_RKWard}). For readers interested in the technical
+design, and reasons for certain design decisions, a technical supplement to this article
+is available.
+
+\begin{figure}[hb!]
\centering
\includegraphics[clip=true,trim=0cm 5.7cm 0cm 5.7cm,width=15.4cm]{./figures/timeline.pdf}
\caption{Timeline of important development milestones and changes in \pkg{RKWard}.
@@ -97,9 +103,3 @@
4.x version of the \pkg{KDE} libraries.}
\label{fig:timeline}
\end{figure}
-
-In this paper we will give an overview over the installation process (Section~\ref{sec:installing_starting_RKWard}), the main GUI elements and
-features of \pkg{RKWard} (Section~\ref{sec:user_interface}), and closing by a short example
-of a simple \pkg{RKWard} session (Section~\ref{sec:using_RKWard}). For readers interested in the technical
-design, and reasons for certain design decisions, a technical supplement to this article
-is available.
Modified: branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/example_session.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/example_session.tex 2011-11-18 13:56:02 UTC (rev 4037)
+++ branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/example_session.tex 2011-11-19 13:53:52 UTC (rev 4038)
@@ -8,6 +8,25 @@
treatment was given to 20 test subjects. The objective is to compare the responses
before and after the treatment.
+\medskip
+\begin{figure}[hb!]
+ \centering
+ \includegraphics[width=13.5cm]{./figures/import_data.png}
+ \caption{A) CSV import dialog. Useful defaults for a variety of common text separated value formats can
+ be set using the ``Quick Mode'' selector on the left. Beyond that, many options can be customized. B) Data editor. The imported CSV
+ data from ``experiment.txt'' are presented (data visually trimmed).}
+ \label{fig:import_data}
+\end{figure}
+
+\newpage
+\begin{figure}[ht!]
+ \centering
+ \includegraphics[width=14cm]{./figures/t-test2.png}
+ \caption{A) Student's t-Test dialog for two variables. The bottom area shows the \proglang{R} code corresponding to the settings.
+ B) Test results in tabular HTML format. }
+ \label{fig:t_test}
+\end{figure}
+
\subsection{Importing data}
\label{sec:importing_data}
Suppose that the data was saved as or exported to CSV format, for example, from a
@@ -30,15 +49,6 @@
Checking the ``Edit Object'' box automatically opens a data editor tab
showing the imported data (Figure~\ref{fig:import_data}B).
-\begin{figure}[b!]
- \centering
- \includegraphics[width=13.5cm]{./figures/import_data.png}
- \caption{A) CSV import dialog. Useful defaults for a variety of common text separated value formats can
- be set using the ``Quick Mode'' selector on the left. Beyond that, many options can be customized. B) Data editor. The imported CSV
- data from ``experiment.txt'' are presented (data visually trimmed).}
- \label{fig:import_data}
-\end{figure}
-\newpage
\subsection{Conducting a Student's t-Test}
\label{sec:conducting_ttest}
To test the hypothesis that the given treatment significantly increased the response, a Student's
@@ -51,14 +61,6 @@
showing the results, including the date of analysis and relevant test parameters (Figure~\ref{fig:t_test}B).
-\begin{figure}[b!]
- \centering
- \includegraphics[width=14cm]{./figures/t-test2.png}
- \caption{A) Student's t-Test dialog for two variables. The bottom area shows the \proglang{R} code corresponding to the settings.
- B) Test results in tabular HTML format. }
- \label{fig:t_test}
-\end{figure}
-
\subsection{Creating a plot}
\label{sec:create_plot}
To visualize the data, ``Boxplot'' is chosen from the ``Plots'' menu
@@ -68,7 +70,7 @@
it is configured, and updates the window in real time on any changes to plot parameters.
The plot can also be exported to several image formats, directly from the preview window (Figure~\ref{fig:boxplot2}).
-\begin{figure}[b!]
+\begin{figure}[hb!]
\centering
\includegraphics[width=15.4cm]{./figures/boxplot1.png}
\caption{Boxplot dialog. The first tab ``Variables'' is used to select the variables for analysis. It is possible to
@@ -76,7 +78,7 @@
\label{fig:boxplot1}
\end{figure}
-\begin{figure}[t!]
+\begin{figure}[ht!]
\centering
\includegraphics[width=14.5cm]{./figures/boxplot2.png}
\caption{Plotted data and plot export dialog. The export dialog (``Device$\rightarrow$Export'') provides numerous
Modified: branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/sources.bib
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/sources.bib 2011-11-18 13:56:02 UTC (rev 4037)
+++ branches/jss_dec_10/FINAL_JSS_TEX/FINAL_splitted/sources.bib 2011-11-19 13:53:52 UTC (rev 4038)
@@ -6,7 +6,7 @@
title = {What is \proglang{R}?},
journal = {\proglang{R} News},
year = {2001},
- pages = {2-3},
+ pages = {2--3},
number = {1},
month = {January},
note = {ISSN 1609-3631},
@@ -62,7 +62,7 @@
journal = {Brazilian Journal of Probability and Statistics},
year = {2009},
volume = {23},
- pages = {107-119},
+ pages = {107--119},
number = {2},
doi = {10.1214/08-BJPS017}
}
@@ -74,7 +74,7 @@
journal = {Journal of Statistical Software},
year = {2010},
volume = {34},
- pages = {1-29},
+ pages = {1--29},
number = {4},
month = {4},
accepted = {2010-01-31},
@@ -93,7 +93,7 @@
editor = {Springer Boston},
author = {B Rossi, B Russo and G Succi},
volume = {319/2010},
- pages = {252-267},
+ pages = {252--267},
comment = {ISSN 1868-4238, ISBN 978-3-642-13243-8},
doi = {10.1007/978-3-642-13244-5_20},
owner = {tux},
@@ -141,7 +141,7 @@
journal = {\proglang{R} News},
year = {2002},
volume = {2},
- pages = {25-27},
+ pages = {25--27},
number = {3},
month = {December},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2002-3.pdf},
@@ -154,7 +154,7 @@
journal = {\proglang{R} News},
year = {2001},
volume = {1},
- pages = {27-31},
+ pages = {27--31},
number = {3},
month = {September},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2001-3.pdf},
@@ -166,7 +166,7 @@
title = {Quantian: A Scientific Computing Environment},
journal = {Proceedings of DSC 2003},
year = {2003},
- pages = {1-7},
+ pages = {1--7},
month = {March},
comment = {ISSN 1609-395X},
owner = {tux},
@@ -200,7 +200,7 @@
title = {Producing Open Source Software: How to Run a Successful Free Software
Project},
year = {2009},
- pages = {10-190},
+ pages = {10--190},
owner = {tux},
timestamp = {2010.07.01}
}
@@ -210,7 +210,7 @@
title = {Editorial},
journal = {\proglang{R} News},
year = {2008},
- pages = {1-2},
+ pages = {1--2},
number = {2},
month = {October},
note = {ISSN 1609-3631},
@@ -239,7 +239,7 @@
journal = {Journal of Statistical Software},
year = {2005},
volume = {14},
- pages = {1-42},
+ pages = {1--42},
number = {9},
month = {8},
accepted = {2005-08-19},
@@ -328,7 +328,7 @@
journal = {Statistical Computing and Graphics Newsletter},
year = {2005},
volume = {16},
- pages = {9-12},
+ pages = {9--12},
number = {2},
month = {12},
url = {http://stat-computing.org/newsletter/issues/scgn-16-2.pdf}
@@ -353,7 +353,7 @@
@ARTICLE{Ihaka_Gentlemen_1993,
author = {Ross Ihaka and Robert Gentleman},
- title = {A Free Software Project - A Brief History},
+ title = {A Free Software Project -- A Brief History},
year = {1998},
owner = {tux},
timestamp = {2010.06.27},
@@ -388,14 +388,14 @@
and Palanque, Philippe and Prates, Raquel and Winckler, Marco},
volume = {5726},
series = {Lecture Notes in Computer Science},
- pages = {432-435},
+ pages = {432--435},
url = {http://dx.doi.org/10.1007/978-3-642-03655-2_48}
}
@ARTICLE{Karatzoglou2004,
author = {Alexandros Karatzoglou and Alexandros Smola and Kurt Hornik and Achim
Zeileis},
- title = {\pkg{kernlab} - An S4 Package for Kernel Methods in \proglang{R}},
+ title = {\pkg{kernlab} -- An S4 Package for Kernel Methods in \proglang{R}},
journal = {Journal of Statistical Software},
year = {2004},
volume = {11},
@@ -474,7 +474,7 @@
journal = {\proglang{R} News},
year = {2006},
volume = {6},
- pages = {2-8},
+ pages = {2--8},
number = {4},
month = {October},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2006-4.pdf},
@@ -483,12 +483,12 @@
@ARTICLE{Lecoutre2003,
author = {E Lecoutre},
- title = {The \pkg{R2HTML} Package - Formatting HTML Output on the Fly or by
+ title = {The \pkg{R2HTML} Package -- Formatting HTML Output on the Fly or by
Using a Template Scheme},
journal = {\proglang{R} News},
year = {2003},
volume = {3},
- pages = {33-36},
+ pages = {33--36},
number = {3},
comment = {ISSN 1609-3631},
owner = {tux},
@@ -501,7 +501,7 @@
Data Analysis},
journal = {Proceedings in Computational Statistics},
year = {2002},
- pages = {575–580},
+ pages = {575--580},
eid = {Physica Verlag, Heidelberg},
abstract = {. (2002) Sweave: dynamic generation of statistical reports using literate
data analysis. In Hardle,W. and Ronz,B. (eds.) Proceedings in Computational
@@ -516,7 +516,7 @@
journal = {\proglang{R} News},
year = {2003},
volume = {3},
- pages = {37-39},
+ pages = {37--39},
number = {3},
month = {December},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2003-3.pdf},
@@ -538,7 +538,7 @@
journal = {\proglang{R} News},
year = {2002},
volume = {2},
- pages = {2-3},
+ pages = {2--3},
number = {1},
month = {March},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2002-1.pdf},
@@ -561,7 +561,7 @@
journal = {\proglang{R} News},
year = {2007},
volume = {7},
- pages = {32-35},
+ pages = {32--35},
number = {2},
month = {October},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2007-2.pdf},
@@ -588,7 +588,7 @@
}
@BOOK{Schlittgen2009,
- title = {Das Statistiklabor - \proglang{R} leicht gemacht},
+ title = {Das Statistiklabor -- \proglang{R} leicht gemacht},
publisher = {Springer},
year = {2009},
author = {Schlittgen R},
@@ -608,7 +608,7 @@
journal = {Analytical Chemistry},
year = {2011},
volume = {83},
- pages = {3379-3385},
+ pages = {3379--3385},
number = {9},
abstract = { Microbead-based assays have evolved into powerful tools for the multiplex
detection of biomolecules. Analytes are captured by DNA or protein
@@ -653,7 +653,7 @@
journal = {Bioinformatics},
year = {2008},
volume = {24},
- pages = {276-278},
+ pages = {276--278},
number = {2},
abstract = {Summary: With the establishment of high-throughput (HT) screening
methods there is an increasing need for automatic analysis methods.
@@ -680,7 +680,7 @@
journal = {\proglang{R} News},
year = {2005},
volume = {5},
- pages = {8-11},
+ pages = {8--11},
number = {1},
month = {May},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2005-1.pdf},
@@ -692,7 +692,7 @@
title = {Internationalization Features of \proglang{R} 2.1.0},
journal = {\proglang{R} News},
year = {2005},
- pages = {2-7},
+ pages = {2--7},
number = {1},
note = {ISSN 1609-3631},
owner = {tux},
@@ -706,7 +706,7 @@
journal = {\proglang{R} News},
year = {2004},
volume = {4},
- pages = {2-4},
+ pages = {2--4},
number = {2},
month = {September},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2004-2.pdf},
@@ -720,7 +720,7 @@
journal = {Journal of Statistical Software},
year = {2006},
volume = {17},
- pages = {1-25},
+ pages = {1--25},
number = {5},
url = {http://www.jstatsoft.org/v17/i05/}
}
@@ -733,7 +733,7 @@
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
- pages = {10783-10790},
+ pages = {10783--10790},
number = {24},
abstract = {A unique property of the mammalian embryo is that stem cells can be
derived from its early tissue lineages. These lineages will give
@@ -844,15 +844,14 @@
}
@ARTICLE{Yang2011,
- author = {Ling Yang and Jun Liu and Mu Liu and Meirui Qian and Minzhou Zhang
- and Huajun Hu},
+ author = {Ling Yang and Jun Liu and Mu Liu and Meirui Qian and Minzhou Zhang and Huajun Hu},
title = {Identification of Fatty Acid Synthase from the Pacific White Shrimp,
Litopenaeus vannamei and its Specific Expression Profiles During
White Spot Syndrome Virus Infection},
journal = {Fish \& Shellfish Immunology},
year = {2011},
volume = {30},
- pages = {744 - 749},
+ pages = {744--749},
number = {2},
doi = {DOI: 10.1016/j.fsi.2010.12.026},
issn = {1050-4648},
@@ -875,7 +874,7 @@
journal = {\proglang{R} News},
year = {2004},
volume = {4},
- pages = {20-25},
+ pages = {20--25},
number = {1},
month = {June},
pdf = {http://CRAN.R-project.org/doc/Rnews/Rnews_2004-1.pdf},
@@ -887,7 +886,7 @@
title = {Open Source Software Reliability Model: An Empirical Approach},
journal = {ACM},
year = {2005},
- pages = {67-72},
+ pages = {67--72},
comment = {Open Source Application Spaces: Fifth Workshop on Open Source Software
Engineering (5-WOSSE)},
owner = {tux},
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