[rkward-cvs] SF.net SVN: rkward:[3558] branches/jss_dec_10/FINAL_JSS_TEX/sources.bib
sjar at users.sourceforge.net
sjar at users.sourceforge.net
Mon May 16 21:22:42 UTC 2011
Revision: 3558
http://rkward.svn.sourceforge.net/rkward/?rev=3558&view=rev
Author: sjar
Date: 2011-05-16 21:22:42 +0000 (Mon, 16 May 2011)
Log Message:
-----------
+ updated references
a) lattice (Grothendieck2008) ready for citation
b) S4 (Karatzoglou2004) needs tag for S4
Modified Paths:
--------------
branches/jss_dec_10/FINAL_JSS_TEX/sources.bib
Modified: branches/jss_dec_10/FINAL_JSS_TEX/sources.bib
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/sources.bib 2011-05-16 08:52:56 UTC (rev 3557)
+++ branches/jss_dec_10/FINAL_JSS_TEX/sources.bib 2011-05-16 21:22:42 UTC (rev 3558)
@@ -1,57 +1,93 @@
-% This file was created with JabRef 2.6.
+% This file was created with JabRef 2.7b.
% Encoding: UTF8
- at article{Almiron2009,
-author = {Marcelo G. Almiron and E. S. Almeida and M. N. Miranda},
-title = {The reliability of statistical functions in four software packages freely used in numerical computation},
-journal = {Brazilian Journal of Probability and Statistics},
-year = {2009},
-volume = {23},
-pages = {107-119},
-number = {2},
-doi = {10.1214/08-BJPS017}
+ at ARTICLE{RDCT2001,
+ author = {{\proglang{R} Core Team}},
+ title = {What is \proglang{R}?},
+ journal = {\proglang{R} News},
+ year = {2001},
+ pages = {2-3},
+ number = {1},
+ month = {January},
+ note = {ISSN 1609-3631},
+ owner = {tux},
+ timestamp = {2010.06.30},
+ url = {http://cran.r-project.org/doc/Rnews/}
}
- at article{Almiron2010,
- author = {Marcelo G. Almiron and Bruno Lopes and Alyson L. C. Oliveira and Antonio C. Medeiros and Alejandro C. Frery},
+ at MANUAL{RDCT2010,
+ title = {\proglang{R}: A Language and Environment for Statistical Computing},
+ author = {{\proglang{R} Development Core Team}},
+ organization = {\proglang{R} Foundation for Statistical Computing},
+ address = {Vienna, Austria},
+ year = {2010},
+ note = {{ISBN} 3-900051-07-0},
+ url = {http://www.R-project.org/}
+}
+
+ at MANUAL{RDCT2010a,
+ title = {Writing \proglang{R} Extensions},
+ author = {{\proglang{R} Development Core Team}},
+ organization = {\proglang{R} Foundation for Statistical Computing},
+ address = {Vienna, Austria},
+ year = {2010},
+ note = {{ISBN} 3-900051-11-9},
+ timestamp = {2010.10.15}
+}
+
+ at MANUAL{RDCT2010b,
+ title = {\proglang{R} Internals},
+ author = {{\proglang{R} Development Core Team}},
+ organization = {\proglang{R} Foundation for Statistical Computing},
+ address = {Vienna, Austria},
+ year = {2010},
+ note = {{ISBN} 3-900051-14-3},
+ timestamp = {2010.10.15}
+}
+
+ at MANUAL{RDCT2010c,
+ title = {\proglang{R} Data {Import/Export}},
+ author = {{\proglang{R} Development Core Team}},
+ organization = {\proglang{R} Foundation for Statistical Computing},
+ address = {Vienna, Austria},
+ year = {2010},
+ note = {{ISBN} 3-900051-10-0},
+ url = {http://www.R-project.org/}
+}
+
+ at ARTICLE{Almiron2009,
+ author = {Marcelo G. Almiron and E. S. Almeida and M. N. Miranda},
+ title = {The reliability of statistical functions in four software packages
+ freely used in numerical computation},
+ journal = {Brazilian Journal of Probability and Statistics},
+ year = {2009},
+ volume = {23},
+ pages = {107-119},
+ number = {2},
+ doi = {10.1214/08-BJPS017}
+}
+
+ at ARTICLE{Almiron2010,
+ author = {Marcelo G. Almiron and Bruno Lopes and Alyson L. C. Oliveira and
+ Antonio C. Medeiros and Alejandro C. Frery},
title = {On the Numerical Accuracy of Spreadsheets},
journal = {Journal of Statistical Software},
+ year = {2010},
volume = {34},
+ pages = {1-29},
number = {4},
- pages = {1-29},
- day = {12},
month = {4},
- year = {2010},
- CODEN = {JSSOBK},
- ISSN = {1548-7660},
+ accepted = {2010-01-31},
bibdate = {2010-01-31},
- URL = {http://www.jstatsoft.org/v34/i04},
- accepted = {2010-01-31},
+ coden = {JSSOBK},
+ day = {12},
+ issn = {1548-7660},
+ url = {http://www.jstatsoft.org/v34/i04}
}
- at PHDTHESIS{Sutherland1966,
- author = {William R. (Bert) Sutherland},
- title = {The On-line Graphical Specification of Computer Procedures},
- school = {MIT},
- year = {1966},
- owner = {tux},
- timestamp = {2010.12.17},
- url = {http://hdl.handle.net/1721.1/13474}
-}
-
- at Article{Rizopoulos2006,
- title = {\pkg{ltm}: An \proglang{R} package for Latent Variable Modelling and Item Response Theory Analyses},
- author = {Dimitris Rizopoulos},
- journal = {Journal of Statistical Software},
- year = {2006},
- volume = {17},
- number = {5},
- pages = {1-25},
- url = {http://www.jstatsoft.org/v17/i05/},
-}
-
@BOOK{RossiB2010,
- title = {Download Patterns and Releases in Open Source Software Projects: A Perfect Symbiosis?},
+ title = {Download Patterns and Releases in Open Source Software Projects:
+ A Perfect Symbiosis?},
publisher = {Springer Boston},
year = {2010},
editor = {Springer Boston},
@@ -61,12 +97,27 @@
comment = {ISSN 1868-4238, ISBN 978-3-642-13243-8},
doi = {10.1007/978-3-642-13244-5_20},
owner = {tux},
- review = {Software usage by end-users is one of the factors used to evaluate the success of software projects. In the context of open source software, there is no single and non-controversial measure of usage, though. Still, one of the most used and readily available measure is data about projects downloads. Nevertheless, download counts and averages do not convey as much information as the patterns in the original downloads time series. In this research, we propose a method to increase the expressiveness of mere download rates by considering download patterns against software releases. We apply experimentally our method to the most downloaded projects of SourceForge’s history crawled through the FLOSSMole repository. Findings show that projects with similar usage can have indeed different levels of sensitivity to releases, revealing different behaviors of users. Future research will develop further the pattern recognition approach to automatically categorize open source projects according to their download patterns.},
+ review = {Software usage by end-users is one of the factors used to evaluate
+ the success of software projects. In the context of open source software,
+ there is no single and non-controversial measure of usage, though.
+ Still, one of the most used and readily available measure is data
+ about projects downloads. Nevertheless, download counts and averages
+ do not convey as much information as the patterns in the original
+ downloads time series. In this research, we propose a method to increase
+ the expressiveness of mere download rates by considering download
+ patterns against software releases. We apply experimentally our method
+ to the most downloaded projects of SourceForge’s history crawled
+ through the FLOSSMole repository. Findings show that projects with
+ similar usage can have indeed different levels of sensitivity to
+ releases, revealing different behaviors of users. Future research
+ will develop further the pattern recognition approach to automatically
+ categorize open source projects according to their download patterns.},
timestamp = {2010.07.01}
}
@BOOK{BlanchetteSummerfield2008,
- title = {\proglang{C++} GUI Programming with \proglang{Qt} 4 (2nd Edition) (Prentice Hall Open Source Software Development Series)},
+ title = {\proglang{C++} GUI Programming with \proglang{Qt} 4 (2nd Edition)
+ (Prentice Hall Open Source Software Development Series)},
publisher = {Prentice Hall},
year = {2008},
author = {Jasmin Blanchette and Mark Summerfield},
@@ -77,9 +128,9 @@
}
@MANUAL{CullmannND,
+ title = {\pkg{KatePart}},
author = {Christoph Cullmann},
year = {n.d.},
- title = {\pkg{KatePart}},
owner = {tux},
timestamp = {2010.12.15},
url = {http://kate-editor.org/about-katepart/}
@@ -124,14 +175,23 @@
url = {http://www.ci.tuwien.ac.at/Conferences/DSC-2003/}
}
+ at MANUAL{Ettrich2002,
+ title = {XEmbed Protocol Specification Version 0.5},
+ author = {Matthias Ettrich and Owen Taylor},
+ year = {2002},
+ owner = {tux},
+ timestamp = {2010.12.12},
+ url = {http://standards.fr eedesktop.org/xembed-spec/xembed-spec-latest.html}
+}
+
@INCOLLECTION{Faure2000,
+ author = {David Faure},
title = {Creating and Using Components (KParts)},
+ booktitle = {\pkg{KDE} 2.0 Development},
publisher = {Sams},
year = {2000},
- author = {David Faure},
+ editor = {David Sweet},
address = {Indianapolis, IN, USA},
- booktitle = {\pkg{KDE} 2.0 Development},
- editor = {David Sweet},
owner = {tux},
timestamp = {2010.12.12}
}
@@ -175,7 +235,8 @@
@ARTICLE{Fox2005,
author = {John Fox},
- title = {The \proglang{R} Commander: A Basic-Statistics Graphical User Interface to \proglang{R}},
+ title = {The \proglang{R} Commander: A Basic-Statistics Graphical User Interface
+ to \proglang{R}},
journal = {Journal of Statistical Software},
year = {2005},
volume = {14},
@@ -193,7 +254,12 @@
@MANUAL{Rcmdr2010,
title = {\pkg{Rcmdr}: \proglang{R} Commander},
- author = {John Fox and with contributions from Liviu Andronic and Michael Ash and Theophilius Boye and Stefano Calza and Andy Chang and Philippe Grosjean and Richard Heiberger and G. Jay Kerns and Renaud Lancelot and Matthieu Lesnoff and Uwe Ligges and Samir Messad and Martin Maechler and Robert Muenchen and Duncan Murdoch and Erich Neuwirth and Dan Putler and Brian Ripley and Miroslav Ristic and and Peter Wolf.},
+ author = {John Fox and with contributions from Liviu Andronic and Michael Ash
+ and Theophilius Boye and Stefano Calza and Andy Chang and Philippe
+ Grosjean and Richard Heiberger and G. Jay Kerns and Renaud Lancelot
+ and Matthieu Lesnoff and Uwe Ligges and Samir Messad and Martin Maechler
+ and Robert Muenchen and Duncan Murdoch and Erich Neuwirth and Dan
+ Putler and Brian Ripley and Miroslav Ristic and and Peter Wolf.},
year = {2010},
note = {\proglang{R} package version 1.6-2},
owner = {tux},
@@ -202,29 +268,61 @@
}
@MANUAL{Friedrichsmeier2010,
+ title = {Introduction to Writing Plugins for \pkg{RKWard}},
author = {Thomas Friedrichsmeier},
- title = {Introduction to Writing Plugins for \pkg{RKWard}},
year = {2010},
owner = {tux},
timestamp = {2010.12.12},
url = {http://rkward.sourceforge.net/documents/devel/plugins/index.html}
}
- at Article{Gentleman2004,
-AUTHOR = {Robert Gentleman and Vincent Carey and Douglas Bates and Ben Bolstad and Marcel Dettling and Sandrine Dudoit and Byron Ellis and Laurent Gautier and Yongchao Ge and Jeff Gentry and Kurt Hornik and Torsten Hothorn and Wolfgang Huber and Stefano Iacus and Rafael Irizarry and Friedrich Leisch and Cheng Li and Martin Maechler and Anthony Rossini and Gunther Sawitzki and Colin Smith and Gordon Smyth and Luke Tierney and Jean Yang and Jianhua Zhang},
-TITLE = {Bioconductor: open software development for computational biology and bioinformatics},
-JOURNAL = {Genome Biology},
-VOLUME = {5},
-YEAR = {2004},
-NUMBER = {10},
-PAGES = {R80},
-URL = {http://genomebiology.com/2004/5/10/R80},
-DOI = {10.1186/gb-2004-5-10-r80},
-PubMedID = {15461798},
-ISSN = {1465-6906},
-ABSTRACT = {The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples.},
+ at ARTICLE{Gentleman2004,
+ author = {Robert Gentleman and Vincent Carey and Douglas Bates and Ben Bolstad
+ and Marcel Dettling and Sandrine Dudoit and Byron Ellis and Laurent
+ Gautier and Yongchao Ge and Jeff Gentry and Kurt Hornik and Torsten
+ Hothorn and Wolfgang Huber and Stefano Iacus and Rafael Irizarry
+ and Friedrich Leisch and Cheng Li and Martin Maechler and Anthony
+ Rossini and Gunther Sawitzki and Colin Smith and Gordon Smyth and
+ Luke Tierney and Jean Yang and Jianhua Zhang},
+ title = {Bioconductor: open software development for computational biology
+ and bioinformatics},
+ journal = {Genome Biology},
+ year = {2004},
+ volume = {5},
+ pages = {R80},
+ number = {10},
+ abstract = {The Bioconductor project is an initiative for the collaborative creation
+ of extensible software for computational biology and bioinformatics.
+ The goals of the project include: fostering collaborative development
+ and widespread use of innovative software, reducing barriers to entry
+ into interdisciplinary scientific research, and promoting the achievement
+ of remote reproducibility of research results. We describe details
+ of our aims and methods, identify current challenges, compare Bioconductor
+ to other open bioinformatics projects, and provide working examples.},
+ doi = {10.1186/gb-2004-5-10-r80},
+ issn = {1465-6906},
+ pubmedid = {15461798},
+ url = {http://genomebiology.com/2004/5/10/R80}
}
+ at ARTICLE{Grothendieck2008,
+ author = {Gabor Grothendieck},
+ title = {\pkg{lattice}: Multivariate Data Visualization with \proglang{R}},
+ journal = {Journal of Statistical Software, Book Reviews},
+ year = {2008},
+ volume = {25},
+ pages = {1--3},
+ number = {2},
+ month = {5},
+ accepted = {2008-05-08},
+ bibdate = {2008-05-08},
+ coden = {JSSOBK},
+ day = {8},
+ issn = {1548-7660},
+ submitted = {2008-05-08},
+ url = {http://www.jstatsoft.org/v25/b02}
+}
+
@ARTICLE{HelbigTheus2005,
author = {Markus Helbig and Martin Theus},
title = {\pkg{JGR}: \proglang{Java} GUI for \proglang{R}},
@@ -263,11 +361,41 @@
url = {http://cran.r-project.org/doc/html/interface98-paper/paper_2.html}
}
+ at ARTICLE{Karatzoglou2004,
+ author = {Alexandros Karatzoglou and Alexandros Smola and Kurt Hornik and Achim
+ Zeileis},
+ title = {\pkg{kernlab} - An S4 Package for Kernel Methods in \proglang{R}},
+ journal = {Journal of Statistical Software},
+ year = {2004},
+ volume = {11},
+ pages = {1--20},
+ number = {9},
+ month = {11},
+ accepted = {2004-11-02},
+ bibdate = {2004-11-02},
+ coden = {JSSOBK},
+ day = {2},
+ issn = {1548-7660},
+ submitted = {2004-08-15},
+ url = {http://www.jstatsoft.org/v11/i09}
+}
+
@ARTICLE{KimLutteroth2010,
author = {James Kim and Christof Lutteroth},
title = {Multi-Platform Document-Oriented GUIs},
year = {2010},
- abstract = {In recent years, increasing complexity of graphical user interfaces (GUIs) of applications has led to problems in GUI management, since there is no single layout to fulfill every user’s needs. GUI editors have been developed to enhance end-user options but they commonly fail to preserve personalized GUIs. This paper presents an extension to the GUI editor built into the Auckland Layout Model (ALM) that can permanently store user-defined GUI layouts and reproduce them on different platforms. A novel technique called the document-oriented approach has been exploited to empower end-user customization, which allows GUI layouts to be dynamically edited, saved using a standardized XML-based GUI description language, and loaded in a platform-independent manner.},
+ abstract = {In recent years, increasing complexity of graphical user interfaces
+ (GUIs) of applications has led to problems in GUI management, since
+ there is no single layout to fulfill every user’s needs. GUI editors
+ have been developed to enhance end-user options but they commonly
+ fail to preserve personalized GUIs. This paper presents an extension
+ to the GUI editor built into the Auckland Layout Model (ALM) that
+ can permanently store user-defined GUI layouts and reproduce them
+ on different platforms. A novel technique called the document-oriented
+ approach has been exploited to empower end-user customization, which
+ allows GUI layouts to be dynamically edited, saved using a standardized
+ XML-based GUI description language, and loaded in a platform-independent
+ manner.},
institution = {CiteSeerX - Scientific Literature Digital Library and Search Engine
[http://citeseerx.ist.psu.edu/oai2] (United States)},
keywords = {GUI customization, platform-independent GUIs, ALM},
@@ -277,6 +405,14 @@
url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.154.8895}
}
+ at MANUAL{KWord,
+ title = {\pkg{KWord}},
+ author = {{KOffice{.}Org}},
+ year = {2010},
+ timestamp = {2010.12.15},
+ url = {http://www.koffice.org/kword/}
+}
+
@ARTICLE{Kuhn2006,
author = {Max Kuhn},
title = {Sweave and the Open Document Format -- The \pkg{odfWeave} Package},
@@ -292,7 +428,8 @@
@ARTICLE{Lecoutre2003,
author = {E Lecoutre},
- title = {The \pkg{R2HTML} Package - Formatting HTML output on the fly or by using a template scheme},
+ title = {The \pkg{R2HTML} Package - Formatting HTML output on the fly or by
+ using a template scheme},
journal = {\proglang{R} News},
year = {2003},
volume = {3},
@@ -311,7 +448,9 @@
year = {2002},
pages = {575–580},
eid = {Physica Verlag, Heidelberg},
- abstract = {. (2002) Sweave: dynamic generation of statistical reports using literate data analysis. In Hardle,W. and Ronz,B. (eds.) Proceedings in Computational Statistics. Physica Verlag, Heidelberg, pp. 575–580.},
+ abstract = {. (2002) Sweave: dynamic generation of statistical reports using literate
+ data analysis. In Hardle,W. and Ronz,B. (eds.) Proceedings in Computational
+ Statistics. Physica Verlag, Heidelberg, pp. 575–580.},
owner = {tux},
timestamp = {2010.07.01}
}
@@ -329,13 +468,13 @@
url = {http://CRAN.R-project.org/doc/Rnews/}
}
- at MANUAL{Ettrich2002,
- author = {Matthias Ettrich and Owen Taylor},
- title = {XEmbed Protocol Specification Version 0.5},
- year = {2002},
+ at MISC{MDN2010,
+ author = {{Microsoft Developer Network}},
+ title = {Microsoft Developer Network},
+ year = {2010},
owner = {tux},
- timestamp = {2010.12.12},
- url = {http://standards.fr eedesktop.org/xembed-spec/xembed-spec-latest.html}
+ timestamp = {2010.12.16},
+ url = {http://msdn2.microsoft.com/en-us/library/ms997505.aspx}
}
@ARTICLE{Murdoch2002,
@@ -351,18 +490,19 @@
url = {http://CRAN.R-project.org/doc/Rnews/}
}
- at MISC{MDN2010,
- author = {{Microsoft Developer Network}},
- title = {Microsoft Developer Network},
- year = {2010},
+ at BOOK{Murrell_2005,
+ title = {\proglang{R} Graphics},
+ publisher = {CRC Press},
+ year = {2005},
+ author = {Paul Murrell},
owner = {tux},
- timestamp = {2010.12.16},
- url = {http://msdn2.microsoft.com/en-us/library/ms997505.aspx}
+ timestamp = {2011.05.10}
}
@ARTICLE{Newton2007,
author = {Richard Newton and Lorenz Wernisch},
- title = {{Rwui}: A Web Application to Create User Friendly Web Interfaces for \proglang{R} Scripts},
+ title = {{Rwui}: A Web Application to Create User Friendly Web Interfaces
+ for \proglang{R} Scripts},
journal = {\proglang{R} News},
year = {2007},
volume = {7},
@@ -381,36 +521,6 @@
url = {http://CRAN.R-project.org/package=trackObjs}
}
- at MANUAL{RDCT2010,
- title = {\proglang{R}: A Language and Environment for Statistical Computing},
- author = {{\proglang{R} Development Core Team}},
- organization = {\proglang{R} Foundation for Statistical Computing},
- address = {Vienna, Austria},
- year = {2010},
- note = {{ISBN} 3-900051-07-0},
- url = {http://www.R-project.org/}
-}
-
- at MANUAL{RDCT2010a,
- title = {Writing \proglang{R} Extensions},
- author = {{\proglang{R} Development Core Team}},
- organization = {\proglang{R} Foundation for Statistical Computing},
- address = {Vienna, Austria},
- year = {2010},
- note = {{ISBN} 3-900051-11-9},
- timestamp = {2010.10.15}
-}
-
- at MANUAL{RDCT2010b,
- title = {\proglang{R} Internals},
- author = {{\proglang{R} Development Core Team}},
- organization = {\proglang{R} Foundation for Statistical Computing},
- address = {Vienna, Austria},
- year = {2010},
- note = {{ISBN} 3-900051-14-3},
- timestamp = {2010.10.15}
-}
-
@BOOK{Schlittgen2009,
title = {Das Statistiklabor - \proglang{R} leicht gemacht},
publisher = {Springer},
@@ -423,6 +533,36 @@
url = {http://www.statistiklabor.de/}
}
+ at ARTICLE{RaffelsbergerW2008,
+ author = {Raffelsberger, Wolfgang and Krause, Yannick and Moulinier, Luc and
+ Kieffer, David and Morand, Anne-Laure and Brino, Laurent and Poch,
+ Olivier},
+ title = {{\pkg{RReportGenerator}: automatic reports from routine statistical
+ analysis using \proglang{R}}},
+ journal = {Bioinformatics},
+ year = {2008},
+ volume = {24},
+ pages = {276-278},
+ number = {2},
+ abstract = {Summary: With the establishment of high-throughput (HT) screening
+ methods there is an increasing need for automatic analysis methods.
+ Here we present RReportGenerator, a user-friendly portal for automatic
+ routine analysis using the statistical platform R and Bioconductor.
+ RReportGenerator is designed to analyze data using predefined analysis
+ scenarios via a graphical user interface (GUI). A report in pdf format
+ combining text, figures and tables is automatically generated and
+ results may be exported. To demonstrate suitable analysis tasks we
+ provide direct web access to a collection of analysis scenarios for
+ summarizing data from transfected cell arrays (TCA), segmentation
+ of CGH data, and microarray quality control and normalization.Availability:
+ RReportGenerator, a user manual and a collection of analysis scenarios
+ are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraffContact:
+ wolfgang.raffelsberger at igbmc.u-strasbg.fr},
+ doi = {10.1093/bioinformatics/btm556},
+ eprint = {http://bioinformatics.oxfordjournals.org/content/24/2/276.full.pdf+html},
+ url = {http://bioinformatics.oxfordjournals.org/content/24/2/276.abstract}
+}
+
@ARTICLE{Ripley2005,
author = {Brian D. Ripley},
title = {Packages and their Management in \proglang{R} 2.1.0},
@@ -462,6 +602,18 @@
url = {http://CRAN.R-project.org/doc/Rnews/}
}
+ at ARTICLE{Rizopoulos2006,
+ author = {Dimitris Rizopoulos},
+ title = {\pkg{ltm}: An \proglang{R} package for Latent Variable Modelling
+ and Item Response Theory Analyses},
+ journal = {Journal of Statistical Software},
+ year = {2006},
+ volume = {17},
+ pages = {1-25},
+ number = {5},
+ url = {http://www.jstatsoft.org/v17/i05/}
+}
+
@MANUAL{TeachingDemos2010,
title = {\pkg{TeachingDemos}: Demonstrations for teaching and learning},
author = {Greg Snow},
@@ -472,18 +624,14 @@
url = {http://CRAN.R-project.org/package=TeachingDemos}
}
- at ARTICLE{RDCT2001,
- author = {{\proglang{R} Core Team}},
- title = {What is \proglang{R}?},
- journal = {\proglang{R} News},
- year = {2001},
- pages = {2-3},
- number = {1},
- month = {January},
- note = {ISSN 1609-3631},
+ at PHDTHESIS{Sutherland1966,
+ author = {William R. (Bert) Sutherland},
+ title = {The On-line Graphical Specification of Computer Procedures},
+ school = {MIT},
+ year = {1966},
owner = {tux},
- timestamp = {2010.06.30},
- url = {http://cran.r-project.org/doc/Rnews/}
+ timestamp = {2010.12.17},
+ url = {http://hdl.handle.net/1721.1/13474}
}
@MANUAL{RDCT2004,
@@ -499,14 +647,37 @@
}
@ARTICLE{Visne2009,
- author = {Visne, Ilhami and Dilaveroglu, Erkan and Vierlinger, Klemens and Lauss, Martin and Yildiz, Ahmet and Weinhaeusel, Andreas and Noehammer, Christa and Leisch, Friedrich and Kriegner, Albert},
+ author = {Visne, Ilhami and Dilaveroglu, Erkan and Vierlinger, Klemens and
+ Lauss, Martin and Yildiz, Ahmet and Weinhaeusel, Andreas and Noehammer,
+ Christa and Leisch, Friedrich and Kriegner, Albert},
title = {\pkg{RGG}: A general GUI Framework for \proglang{R} scripts},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
pages = {74},
number = {1},
- abstract = {BACKGROUND:R is the leading open source statistics software with a vast number of biostatistical and bioinformatical analysis packages. To exploit the advantages of R, extensive scripting/programming skills are required.RESULTS:We have developed a software tool called R GUI Generator (RGG) which enables the easy generation of Graphical User Interfaces (GUIs) for the programming language R by adding a few Extensible Markup Language (XML) - tags. RGG consists of an XML-based GUI definition language and a Java-based GUI engine. GUIs are generated in runtime from defined GUI tags that are embedded into the R script. User-GUI input is returned to the R code and replaces the XML-tags. RGG files can be developed using any text editor. The current version of RGG is available as a stand-alone software (RGGRunner) and as a plug-in for JGR.CONCLUSION:RGG is a general GUI framework for R that has the potential to introduce R statistics (R packages, built-in functions and scripts) to users with limited programming skills and helps to bridge the gap between R developers and GUI-dependent users. RGG aims to abstract the GUI development from individual GUI toolkits by using an XML-based GUI definition language. Thus RGG can be easily integrated in any software. The RGG project further includes the development of a web-based repository for RGG-GUIs. RGG is an open source project licensed under the Lesser General Public License (LGPL) and can be downloaded freely at http://rgg.r-forge.r-project.org},
+ abstract = {BACKGROUND:R is the leading open source statistics software with a
+ vast number of biostatistical and bioinformatical analysis packages.
+ To exploit the advantages of R, extensive scripting/programming skills
+ are required.RESULTS:We have developed a software tool called R GUI
+ Generator (RGG) which enables the easy generation of Graphical User
+ Interfaces (GUIs) for the programming language R by adding a few
+ Extensible Markup Language (XML) - tags. RGG consists of an XML-based
+ GUI definition language and a Java-based GUI engine. GUIs are generated
+ in runtime from defined GUI tags that are embedded into the R script.
+ User-GUI input is returned to the R code and replaces the XML-tags.
+ RGG files can be developed using any text editor. The current version
+ of RGG is available as a stand-alone software (RGGRunner) and as
+ a plug-in for JGR.CONCLUSION:RGG is a general GUI framework for R
+ that has the potential to introduce R statistics (R packages, built-in
+ functions and scripts) to users with limited programming skills and
+ helps to bridge the gap between R developers and GUI-dependent users.
+ RGG aims to abstract the GUI development from individual GUI toolkits
+ by using an XML-based GUI definition language. Thus RGG can be easily
+ integrated in any software. The RGG project further includes the
+ development of a web-based repository for RGG-GUIs. RGG is an open
+ source project licensed under the Lesser General Public License (LGPL)
+ and can be downloaded freely at http://rgg.r-forge.r-project.org},
doi = {10.1186/1471-2105-10-74},
issn = {1471-2105},
owner = {tux},
@@ -515,20 +686,6 @@
url = {http://www.biomedcentral.com/1471-2105/10/74}
}
- at article{RaffelsbergerW2008,
-author = {Raffelsberger, Wolfgang and Krause, Yannick and Moulinier, Luc and Kieffer, David and Morand, Anne-Laure and Brino, Laurent and Poch, Olivier},
-title = {{\pkg{RReportGenerator}: automatic reports from routine statistical analysis using \proglang{R}}},
-volume = {24},
-number = {2},
-pages = {276-278},
-year = {2008},
-doi = {10.1093/bioinformatics/btm556},
-abstract ={Summary: With the establishment of high-throughput (HT) screening methods there is an increasing need for automatic analysis methods. Here we present RReportGenerator, a user-friendly portal for automatic routine analysis using the statistical platform R and Bioconductor. RReportGenerator is designed to analyze data using predefined analysis scenarios via a graphical user interface (GUI). A report in pdf format combining text, figures and tables is automatically generated and results may be exported. To demonstrate suitable analysis tasks we provide direct web access to a collection of analysis scenarios for summarizing data from transfected cell arrays (TCA), segmentation of CGH data, and microarray quality control and normalization.Availability: RReportGenerator, a user manual and a collection of analysis scenarios are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraffContact: wolfgang.raffelsberger at igbmc.u-strasbg.fr},
-URL = {http://bioinformatics.oxfordjournals.org/content/24/2/276.abstract},
-eprint = {http://bioinformatics.oxfordjournals.org/content/24/2/276.full.pdf+html},
-journal = {Bioinformatics}
-}
-
@ARTICLE{Young_2004,
author = {F Young},
title = {ViSta, the Visual Statistic System},
@@ -557,29 +714,12 @@
journal = {ACM},
year = {2005},
pages = {67-72},
- comment = {Open Source Application Spaces: Fifth Workshop on Open Source Software Engineering (5-WOSSE)},
+ comment = {Open Source Application Spaces: Fifth Workshop on Open Source Software
+ Engineering (5-WOSSE)},
owner = {tux},
timestamp = {2010.07.01}
}
- at MANUAL{KWord,
- title = {\pkg{KWord}},
- author = {{KOffice{.}Org}},
- year = {2010},
- timestamp = {2010.12.15},
- url = {http://www.koffice.org/kword/}
-}
-
- at MANUAL{RDCT2010c,
- title = {\proglang{R} Data {Import/Export}},
- author = {{\proglang{R} Development Core Team}},
- organization = {\proglang{R} Foundation for Statistical Computing},
- address = {Vienna, Austria},
- year = {2010},
- note = {{ISBN} 3-900051-10-0},
- url = {http://www.R-project.org/}
-}
-
@comment{jabref-meta: selector_publisher:}
@comment{jabref-meta: selector_author:}
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