[rkward-cvs] SF.net SVN: rkward:[3379] branches/jss_dec_10/FINAL_JSS_TEX
tfry at users.sourceforge.net
tfry at users.sourceforge.net
Sat Jan 22 12:18:49 UTC 2011
Revision: 3379
http://rkward.svn.sourceforge.net/rkward/?rev=3379&view=rev
Author: tfry
Date: 2011-01-22 12:18:49 +0000 (Sat, 22 Jan 2011)
Log Message:
-----------
Adjust figure placement as advised by the editors. I've also removed two non-essential forward references to figures.
Modified Paths:
--------------
branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex
branches/jss_dec_10/FINAL_JSS_TEX/example_plugin.tex
branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex
branches/jss_dec_10/FINAL_JSS_TEX/revision_notes.txt
branches/jss_dec_10/FINAL_JSS_TEX/technical.tex
Modified: branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex 2011-01-20 23:44:33 UTC (rev 3378)
+++ branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex 2011-01-22 12:18:49 UTC (rev 3379)
@@ -19,7 +19,7 @@
visualization features (see Section~\ref{sec:analyzing_data}) for which RKWard provides a GUI
interface.
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.450cm]{../figures/main_window.png}
\caption{Default RKWard main window after start up.
@@ -165,15 +165,15 @@
for inclusion in an \proglang{R} script, optionally
transforming it in advance (Figure~\ref{fig:special_paste}).
-\begin{figure}[htp]
+\begin{figure}[t!]
\centering
\includegraphics[width=15.5cm]{../figures/code_hinting.png}
\caption{Code hinting features of the script editor. The script editor is able to hint A) \proglang{R} object names
-and B) function arguments. Random data (\code{rnorm()}, n = 50) were assigned to a variable and later used in Figure~\ref{fig:plot_history}.}
+and B) function arguments.}
\label{fig:code_hinting}
\end{figure}
-\begin{figure}[htp]
+\begin{figure}[t!]
\centering
\includegraphics[width=8.043cm]{../figures/special_paste.png}
\caption{Paste special dialog. This tool allows to paste data (e.\,g., tabular, text) from the clipboard, directly to an
@@ -228,7 +228,7 @@
\proglang{R} code, the function \code{rk.edit()} can be used.
Figure~\ref{fig:data_editors} shows multiple \code{data.frame}s open for editing.
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.5cm]{../figures/data_editors.png}
\caption{RKWard with several \code{data.frame}s in use at the same time. A)
@@ -322,7 +322,7 @@
it is required to specify a file before the dialog can proceed.
Further options are available from the tabbed pages of the central area.
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.5cm]{../figures/CSV_import.png}
\caption{General data import dialog. Useful defaults for a variety of formats can
@@ -381,7 +381,7 @@
back to the plot history. In addition, duplicating or closing a device
window records any unsaved plots to the history.
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics{../figures/plot_history_cropped.png}
\caption{On{}-screen graphics device window in RKWard. The plot history is
@@ -396,8 +396,8 @@
Further, RKWard provides access to different plotting functions using GUI dialogs,
available from the ``Plots'' menu. Wherever appropriate, RKWard supports a ``plot
preview'' feature. When the ``Preview'' box of
-the respective dialog is checked (see Figure~\ref{fig:boxplot1}), a device window is opened, which
-shows the plot as it would be created with the current settings. The
+the respective dialog is checked, a device window is opened, which
+shows the plot as it would be created with the current settings (see Section~\ref{sec:create_plot} for an example). The
preview is updated automatically as the user makes changes, allowing to
see the effect of each setting instantly\footnote{The preview is
updated asynchronously to keep the GUI responsive; see Section~\ref{sec:technical_graphics}.}. For example, the CLT
@@ -437,7 +437,7 @@
data, providing benefits similar to, for example, the automated report generation
available from \pkg{RreportGenerator} \citep{RaffelsbergerW2008}.
-\begin{figure}[htp]
+\begin{figure}[t!]
\centering
\includegraphics[width=15.5cm]{../figures/results_output_cropped.png}
\caption{Sample contents of the output window. \code{DNase} data of the \pkg{datasets} package was used.
Modified: branches/jss_dec_10/FINAL_JSS_TEX/example_plugin.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/example_plugin.tex 2011-01-20 23:44:33 UTC (rev 3378)
+++ branches/jss_dec_10/FINAL_JSS_TEX/example_plugin.tex 2011-01-22 12:18:49 UTC (rev 3379)
@@ -20,13 +20,11 @@
\begin{footnotesize}
\begin{Code}
<!DOCTYPE rkpluginmap>
-
<document base_prefix="" namespace="rkward">
<components>
<component type="standard" id="t_test_two_vars"
file="demo_t_test_two_vars.xml" label="Two Variable t-test" />
</components>
-
<hierarchy>
<menu id="analysis" label="Analysis" index="4">
<menu id="means" label="Means" index="4">
@@ -41,7 +39,7 @@
\end{footnotesize}
-\begin{figure}[htp]
+\begin{figure}[t!]
\centering
\includegraphics{../figures/ttest-gui-example.png}
\caption{Generated menu structure as defined by the plugin map.}
Modified: branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex 2011-01-20 23:44:33 UTC (rev 3378)
+++ branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex 2011-01-22 12:18:49 UTC (rev 3379)
@@ -29,7 +29,7 @@
Checking the ``Edit Object'' box automatically opens a data editor tab
showing the imported data (Figure~\ref{fig:import_data}B).
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.5cm]{../figures/import_data.png}
\caption{A) CSV import dialog. Useful defaults for a variety of common text separated value formats can
@@ -50,7 +50,7 @@
showing the results (Figure~\ref{fig:t_test}B).
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.5cm]{../figures/t-test2.png}
\caption{A) Student's t-test dialog for two variables. The bottom area shows the \proglang{R} code corresponding to the settings.
@@ -68,7 +68,7 @@
it is configured, and updates the window in real time on any changes to plot parameters.
The plot can also be exported to several image formats, directly from the preview window (Figure~\ref{fig:boxplot2}).
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.5cm]{../figures/boxplot1.png}
\caption{Boxplot dialog. The first tab ``Variables'' is used to select the variables for analysis. It is possible to
@@ -76,7 +76,7 @@
\label{fig:boxplot1}
\end{figure}
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=15.5cm]{../figures/boxplot2.png}
\caption{Plotted data and plot export dialog. The export dialog (``Device$\rightarrow$Export'') provides numerous
Modified: branches/jss_dec_10/FINAL_JSS_TEX/revision_notes.txt
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/revision_notes.txt 2011-01-20 23:44:33 UTC (rev 3378)
+++ branches/jss_dec_10/FINAL_JSS_TEX/revision_notes.txt 2011-01-22 12:18:49 UTC (rev 3379)
@@ -8,6 +8,12 @@
o All code comments (#) should be removed and incorporated within the text
of the manuscript.
+o Figure placement (i.e. placement of floating objects):
+ The {figure} or {table} environment should be close to the first
+ reference in the manuscript. It should first use the "t!" option for
+ placement. If a figure then ends up before the start of its (sub)section,
+ "t!" should be changed to "b!". e.g., {figure}[b!].
+
References
- Java (not: JAVA, java)
@@ -59,12 +65,6 @@
o please check all abbreviations
- see our notes below
-o Figure placement (i.e. placement of floating objects):
- The {figure} or {table} environment should be close to the first
- reference in the manuscript. It should first use the "t!" option for
- placement. If a figure then ends up before the start of its (sub)section,
- "t!" should be changed to "b!". e.g., {figure}[b!].
-
--- Items that we are not sure about ---
---- Use of the \proglang macro ----
In several cases, we are not entirely sure, whether the use of the \proglang macro is called for or not.
@@ -136,6 +136,9 @@
-- TODO --
- Complete?
--- TODO --
-- Check, whether we are really following the above lists, consistently.
-- Also check, whether we introduce all abbreviations, properly.
+-- Generic TODO list --
+- Check, whether we are really following the above lists (markup, abbreviations), consistently.
+ - Also check, whether we introduce all abbreviations, properly.
+- Second check figure placement
+
+
Modified: branches/jss_dec_10/FINAL_JSS_TEX/technical.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/technical.tex 2011-01-20 23:44:33 UTC (rev 3378)
+++ branches/jss_dec_10/FINAL_JSS_TEX/technical.tex 2011-01-22 12:18:49 UTC (rev 3379)
@@ -49,7 +49,7 @@
of \proglang{R} commands has even been moved into a separate process. Therefore in future releases it could
be made possible to run GUI and \proglang{R} engine on different computers.
-\begin{figure}[htp]
+\begin{figure}[t!]
\centering
\includegraphics{../figures/design_sketch.pdf}
\caption{Technical design of RKWard. Only a few central components are visualized.
@@ -218,7 +218,7 @@
\citep[see Section~\ref{sec:example_plugin} for an example; for a complete
manual, see][]{Friedrichsmeier2010}:
-\begin{figure}[htp]
+\begin{figure}[b!]
\centering
\includegraphics[width=8cm]{../figures/plugin_structure.pdf}
\caption{Plugin structure of RKWard. One or more plugins are declared in a ``plugin map''. Each plugin is defined by
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