[rkward-cvs] SF.net SVN: rkward:[3417] branches/jss_dec_10
sjar at users.sourceforge.net
sjar at users.sourceforge.net
Sun Feb 6 15:05:46 UTC 2011
Revision: 3417
http://rkward.svn.sourceforge.net/rkward/?rev=3417&view=rev
Author: sjar
Date: 2011-02-06 15:05:45 +0000 (Sun, 06 Feb 2011)
Log Message:
-----------
* Final touces to figure placement and alike
Modified Paths:
--------------
branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex
branches/jss_dec_10/FINAL_JSS_TEX/RKWard_paper.tex
branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex
branches/jss_dec_10/FINAL_JSS_TEX/installing_starting_RKWard.tex
branches/jss_dec_10/FINAL_JSS_TEX/technical.tex
branches/jss_dec_10/figures/boxplot1.png
branches/jss_dec_10/figures/boxplot2.png
branches/jss_dec_10/figures/import_data.png
branches/jss_dec_10/figures/special_paste.png
branches/jss_dec_10/figures/t-test2.png
Modified: branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex 2011-02-06 01:00:10 UTC (rev 3416)
+++ branches/jss_dec_10/FINAL_JSS_TEX/GUI_elements.tex 2011-02-06 15:05:45 UTC (rev 3417)
@@ -175,7 +175,7 @@
\begin{figure}[t!]
\centering
- \includegraphics[width=8.043cm]{../figures/special_paste.png}
+ \includegraphics[width=9.0cm]{../figures/special_paste.png}
\caption{Paste special dialog. This tool allows to paste data (e.\,g., tabular, text) from the clipboard, directly to an
\proglang{R} script and therefore accelerates the work process with data from different sources
like spreadsheet applications.
Modified: branches/jss_dec_10/FINAL_JSS_TEX/RKWard_paper.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/RKWard_paper.tex 2011-02-06 01:00:10 UTC (rev 3416)
+++ branches/jss_dec_10/FINAL_JSS_TEX/RKWard_paper.tex 2011-02-06 15:05:45 UTC (rev 3417)
@@ -43,9 +43,9 @@
\item$^{\ddag}$Equal contribution, $^{\S}$Corresponding authors
%%
}
-\Keywords{GUI, integrated development environment, \proglang{R}, plugin, cross-platform}
+\Keywords{cross-platform, GUI, integrated development environment, plugin, \proglang{R}}
-\Plainkeywords{GUI, integrated development environment, R, plugin, cross-platform} %% without formatting
+\Plainkeywords{cross-platform, GUI, integrated development environment, plugin, R} %% without formatting
%% at \leftarrowst one keyword must be supplied
%% publication information
Modified: branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex 2011-02-06 01:00:10 UTC (rev 3416)
+++ branches/jss_dec_10/FINAL_JSS_TEX/example_session.tex 2011-02-06 15:05:45 UTC (rev 3417)
@@ -32,13 +32,13 @@
\begin{figure}[b!]
\centering
- \includegraphics[width=15.5cm]{../figures/import_data.png}
+ \includegraphics[width=13.5cm]{../figures/import_data.png}
\caption{A) CSV import dialog. Useful defaults for a variety of common text separated value formats can
be set using the ``Quick Mode'' selector on the left. Beyond that, many options can be customized. B) Data editor. The imported CSV
data from ``experiment.txt'' are presented (data visually trimmed).}
\label{fig:import_data}
\end{figure}
-
+\newpage
\subsection{Conducting a Student's t-test}
\label{sec:conducting_ttest}
To test the hypothesis that the given treatment significantly increased the response, a Student's
@@ -53,7 +53,7 @@
\begin{figure}[b!]
\centering
- \includegraphics[width=12.5cm]{../figures/t-test2.png}
+ \includegraphics[width=14cm]{../figures/t-test2.png}
\caption{A) Student's t-test dialog for two variables. The bottom area shows the \proglang{R} code corresponding to the settings.
B) Test results in tabular HTML format.
Besides the result, information such as the date of analysis and the relevant test parameters are also reported.}
@@ -69,17 +69,17 @@
it is configured, and updates the window in real time on any changes to plot parameters.
The plot can also be exported to several image formats, directly from the preview window (Figure~\ref{fig:boxplot2}).
-\begin{figure}[b!]
+\begin{figure}[t!]
\centering
- \includegraphics[width=11.5cm]{../figures/boxplot1.png}
+ \includegraphics[width=14cm]{../figures/boxplot1.png}
\caption{Boxplot dialog. The first tab ``Variables'' is used to select the variables for analysis. It is possible to
combine any data present in \code{.GlobalEnv}. The second tab ``Options'' allows further adjustments (e.\,g., the addition of mean and standard deviation) to the plot (not shown).}
\label{fig:boxplot1}
\end{figure}
-\begin{figure}[b!]
+\begin{figure}[t!]
\centering
- \includegraphics[width=13.0cm]{../figures/boxplot2.png}
+ \includegraphics[width=14.5cm]{../figures/boxplot2.png}
\caption{Plotted data and plot export dialog. The export dialog (``Device$\rightarrow$Export'') provides numerous
options like resolution and size for different vector formats (e.\,g., SVG, PDF) and
pixel formats (e.\,g., PNG, JPEG). (Note: For the shown figure, the optional
Modified: branches/jss_dec_10/FINAL_JSS_TEX/installing_starting_RKWard.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/installing_starting_RKWard.tex 2011-02-06 01:00:10 UTC (rev 3416)
+++ branches/jss_dec_10/FINAL_JSS_TEX/installing_starting_RKWard.tex 2011-02-06 15:05:45 UTC (rev 3417)
@@ -5,7 +5,7 @@
including Debian, Ubuntu, OpenSuse, Gentoo, and Fedora. On the Microsoft Windows
platform, \pkg{RKWard} is available in two forms: as a single binary
installer (requires existing installations of
-\proglang{R} and \pkg{RKWard}) and
+\proglang{R} and \pkg{KDE}) and
as an installation bundle (including \proglang{R} and
essential parts of the \pkg{KDE} runtime environment)\footnote{For detailed information please refer to the
\pkg{RKWard} wiki \url{http://p.sf.net/rkward/windows}.}. At the time of
Modified: branches/jss_dec_10/FINAL_JSS_TEX/technical.tex
===================================================================
--- branches/jss_dec_10/FINAL_JSS_TEX/technical.tex 2011-02-06 01:00:10 UTC (rev 3416)
+++ branches/jss_dec_10/FINAL_JSS_TEX/technical.tex 2011-02-06 15:05:45 UTC (rev 3417)
@@ -51,7 +51,7 @@
\begin{figure}[t!]
\centering
- \includegraphics{../figures/design_sketch.pdf}
+ \includegraphics[clip=true,trim=0cm 2cm 0cm 0cm]{../figures/design_sketch.pdf}
\caption{Technical design of \pkg{RKWard}. Only a few central components are visualized.
All communication with the \proglang{R} engine is passed through a single interface living in the main application thread. The \proglang{R} engine itself
runs in a separate thread (or in a separate process).
@@ -218,9 +218,9 @@
\citep[see Section~\ref{sec:example_plugin} for an example; for a complete
manual, see][]{Friedrichsmeier2010}:
-\begin{figure}[b!]
+\begin{figure}[t!]
\centering
- \includegraphics[width=8cm]{../figures/plugin_structure.pdf}
+ \includegraphics[clip=true,trim=0cm 6cm 0cm 0cm,width=8cm]{../figures/plugin_structure.pdf}
\caption{Plugin structure of \pkg{RKWard}. One or more plugins are declared in a ``plugin map''. Each plugin is defined by
two XML files, and one \proglang{ECMAScript} file.}
\label{fig:plugin_structure}
Modified: branches/jss_dec_10/figures/boxplot1.png
===================================================================
(Binary files differ)
Modified: branches/jss_dec_10/figures/boxplot2.png
===================================================================
(Binary files differ)
Modified: branches/jss_dec_10/figures/import_data.png
===================================================================
(Binary files differ)
Modified: branches/jss_dec_10/figures/special_paste.png
===================================================================
(Binary files differ)
Modified: branches/jss_dec_10/figures/t-test2.png
===================================================================
(Binary files differ)
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