[rkward-tracker] [ rkward-Bugs-3050970 ] output of system commands is not shown

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Bugs item #3050970, was opened at 2010-08-22 21:14
Message generated for change (Comment added) made by tfry
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Benjamin McCann (chengas123)
Assigned to: Nobody/Anonymous (nobody)
>Summary: output of system commands is not shown

Initial Comment:
When I get an error installing a package in RKWard I cannot determine why:

install.packages("quantstrat", repos="http://R-Forge.R-project.org", type="source")
Warning in install.packages("quantstrat", repos = "http://R-Forge.R-project.org",  :
  argument 'lib' is missing: using '/home/bmccann/R/i486-pc-linux-gnu-library/2.11'
Warning: dependency ‘blotter (>= 0.7)’ is not available
trying URL 'http://R-Forge.R-project.org/src/contrib/quantstrat_0.3.tar.gz'
Content type 'application/x-gzip' length 41494 bytes (40 Kb)
opened URL
==================================================
downloaded 40 Kb


The downloaded packages are in
	‘/tmp/RtmpTKNnvi/downloaded_packages’
Warning message:
In install.packages("quantstrat", repos = "http://R-Forge.R-project.org",  :
  installation of package 'quantstrat' had non-zero exit status



However, if I do the same within the R shell directly I get a much more informative error:

install.packages("quantstrat", repos="http://R-Forge.R-project.org", type="source")
Warning in install.packages("quantstrat", repos = "http://R-Forge.R-project.org",  :
  argument 'lib' is missing: using '/home/bmccann/R/i486-pc-linux-gnu-library/2.11'
Warning: dependency \u2018blotter (>= 0.7)\u2019 is not available
trying URL 'http://R-Forge.R-project.org/src/contrib/quantstrat_0.3.tar.gz'
Content type 'application/x-gzip' length 41494 bytes (40 Kb)
opened URL
==================================================
downloaded 40 Kb

* installing *source* package \u2018quantstrat\u2019 ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: zoo
Error : package 'blotter' 0.6 was found, but >= 0.7 is required by 'quantstrat'
ERROR: lazy loading failed for package \u2018quantstrat\u2019
* removing \u2018/home/bmccann/R/i486-pc-linux-gnu-library/2.11/quantstrat\u2019
* restoring previous \u2018/home/bmccann/R/i486-pc-linux-gnu-library/2.11/quantstrat\u2019

The downloaded packages are in
	\u2018/tmp/RtmpHhKZqp/downloaded_packages\u2019
Warning message:
In install.packages("quantstrat", repos = "http://R-Forge.R-project.org",  :
  installation of package 'quantstrat' had non-zero exit status

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>Comment By: Thomas Friedrichsmeier (tfry)
Date: 2010-09-01 17:28

Message:
Hi,

thanks for reporting this issue. The more generic problem is that output
generated by external commands simply does not appear in the console. E.g.
    system ("ls")
will not produce any visible output. The specific issue you report is just
a symptom of this, although a particularly annoying symptom, indeed. R is
not friendly to GUIs at this point, although it may be possible for us to
hack around this problem.

See also the option "show.output.on.console" of system(), which is only
implemented on Windows, unfortunately.


-- Technical notes:

One approach could be to override system(), adding some wrapper mini-app
to each command which captures the output and relays it to RKWard (only if
intern==FALSE and wait==TRUE).

----------------------------------------------------------------------

You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=459007&aid=3050970&group_id=50231