[Bug 252309] science/openbabel: upgrade to 3.1.1

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=252309

--- Comment #9 from Thierry Thomas <thierry at FreeBSD.org> ---
(In reply to Yuri Victorovich from comment #8)

The aim of all this stuff is to be able to upgrade v_sim: see PR 252308
(directly available in the field "Blocks").

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