Parse errors running latest configure/qmake

[Chris January]

Running the latest version of configure/qmake I'm seeing parse errors
similar to:
For C:\msys\1.0\home\Chris\qt-3\plugins\src\styles\compact\compact.pro
compact.dsp:2: Parse Error ('<VisualStudioProject')
Error processing project file:
C:/msys/1.0/home/Chris/qt-3/plugins/src/styles/co
mpact/compact.dsp
Etc.
I invoked configure using:
configure-msvc.net.bat

What did I do wrong?
Do I need to delete some files before I run configure?

Chris

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