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<div><strong>I almost tried for 1 week now to install rJava and package FSelector with rkward on my Linux machine but couldn't do so.<br/>
I searched all the forums and tried some tricks ... but unfortunately couldn't find any solution.<br/>
First of all I did try to install rJava in my rkward without any changes , that gave me the following error :</strong><br/>
</div>
<div> configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.</div>
<div> ERROR: configuration failed for package ‘rJava’</div>
<div> * removing ‘/home/uwe/.rkward/library/rJava’</div>
<div> Warnmeldung:</div>
<div> In install.packages(pkgs = c("rJava"), lib = "/home/uwe/.rkward/library", :<br/>
Installation des Pakets ‘rJava’ hatte Exit-Status ungleich 0</div>
<div> </div>
<div><strong>So then I started searching and found a tip. I did run the following;</strong></div>
<div> </div>
<div> <br/>
uwe@linux-k2a8:~> sudo R CMD javareconf</div>
<div> Java interpreter : /usr/bin/java<br/>
Java version : 1.7.0_45<br/>
Java home path : /usr/lib/jdk1.7.0_45/jre<br/>
Java compiler : /usr/bin/javac<br/>
Java headers gen.: /usr/bin/javah<br/>
Java archive tool: /usr/bin/jar<br/>
NOTE: Your JVM has a bogus java.library.path system property!<br/>
Trying a heuristic via sun.boot.library.path to find jvm library...<br/>
Java library path: $(JAVA_HOME)/lib/i386/client<br/>
JNI linker flags : -L$(JAVA_HOME)/lib/i386/client -ljvm<br/>
JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux<br/>
Updating Java configuration in /usr/lib/R<br/>
Done.</div>
<div><strong>And also did check</strong></div>
<div> <br/>
uwe@linux-k2a8:~> java -version<br/>
java version "1.7.0_45"<br/>
Java(TM) SE Runtime Environment (build 1.7.0_45-b18)<br/>
Java HotSpot(TM) Server VM (build 24.45-b08, mixed mode)</div>
<div> uwe@linux-k2a8:~> sudo /usr/sbin/update-alternatives --config java<br/>
There are 4 choices for the alternative java (providing /usr/bin/java).<br/>
Selection Path Priority Status<br/>
------------------------------------------------------------<br/>
0 /usr/lib/jvm/jre-1.7.0-openjdk/bin/java 17147 auto mode<br/>
1 /usr/java/latest/bin/java 1 manual mode<br/>
* 2 /usr/lib/jdk_Oracle/bin/java 3 manual mode<br/>
3 /usr/lib/jvm/jre-1.5.0-gcj/bin/java 1500 manual mode<br/>
4 /usr/lib/jvm/jre-1.7.0-openjdk/bin/java 17147 manual mode<br/>
Press enter to keep the current choice[*], or type selection number:<br/>
<br/>
<br/>
<br/>
<strong>I absolutely don't know what is wrong with that setup since my Java seems to have JDK and all the other things needed for R.</strong><br/>
<br/>
<strong>For your Information here my system:</strong></div>
<div> uwe@linux-k2a8:~> uname -rm<br/>
3.4.63-2.44-desktop i686<br/>
<br/>
uwe@linux-k2a8:~> cat /proc/version<br/>
Linux version 3.4.63-2.44-desktop (geeko@buildhost) (gcc version 4.7.1 20120723 [gcc-4_7-branch revision 189773] (S Linux) ) #1 SMP PREEMPT Wed Oct 2 11:18:32 UTC 2013 (d91a619)</div>
<div> <br/>
<strong>I would be really thankful for any advise to get rJava (and FSelector) running soon.</strong><br/>
</div>
<div><strong>FOR YOUR FULL INFORMATION HERE IS THE LOG FILE</strong></div>
<div> </div>
<div> This file contains any messages produced by compilers while<br/>
running configure, to aid debugging if configure makes a mistake.<br/>
<br/>
It was created by rJava configure 0.8, which was<br/>
generated by GNU Autoconf 2.61. Invocation command line was<br/>
<br/>
$ ./configure<br/>
<br/>
## --------- ##<br/>
## Platform. ##<br/>
## --------- ##<br/>
<br/>
hostname = linux-k2a8.site<br/>
uname -m = i686<br/>
uname -r = 3.4.63-2.44-desktop<br/>
uname -s = Linux<br/>
uname -v = #1 SMP PREEMPT Wed Oct 2 11:18:32 UTC 2013 (d91a619)<br/>
<br/>
/usr/bin/uname -p = i686<br/>
/bin/uname -X = unknown<br/>
<br/>
/bin/arch = i686<br/>
/usr/bin/arch -k = unknown<br/>
/usr/convex/getsysinfo = unknown<br/>
/usr/bin/hostinfo = unknown<br/>
/bin/machine = unknown<br/>
/usr/bin/oslevel = unknown<br/>
/bin/universe = unknown<br/>
<br/>
PATH: /home/uwe/bin<br/>
PATH: /usr/local/bin<br/>
PATH: /usr/bin<br/>
PATH: /bin<br/>
PATH: /usr/bin/X11<br/>
PATH: /usr/X11R6/bin<br/>
PATH: /usr/games<br/>
PATH: /opt/kde3/bin<br/>
<br/>
<br/>
## ----------- ##<br/>
## Core tests. ##<br/>
## ----------- ##<br/>
<br/>
configure:1616: loading site script /usr/share/site/i686-pc-linux-gnu<br/>
| #!/bin/sh<br/>
| # Site script for configure. It is resourced via $CONFIG_SITE environment varaible.<br/>
|<br/>
| # If user did not specify libdir, guess the correct target:<br/>
| # Use lib64 for 64 bit bi-arch targets, keep the default for the rest.<br/>
| if test "$libdir" = '${exec_prefix}/lib' ; then<br/>
|<br/>
| ac_config_site_64bit_host=NONE<br/>
|<br/>
| case "$host" in<br/>
| "" )<br/>
| # User did not specify host target.<br/>
| # The native platform i386 is not a bi-arch platform.<br/>
| # There is no need to check for compatible sub-architecture.<br/>
| ac_config_site_64bit_host=NONE<br/>
|<br/>
| ;;<br/>
| *x86_64* | *ppc64* | *s390x* )<br/>
| ac_config_site_64bit_host=YES<br/>
| ;;<br/>
| esac<br/>
|<br/>
| if test "x$ac_config_site_64bit_host" = xYES; then<br/>
| libdir='${exec_prefix}/lib64'<br/>
| fi<br/>
| fi<br/>
|<br/>
| # If user did not specify libexecdir, set the correct target:<br/>
| # Nor FHS nor openSUSE allow prefix/libexec. Let's default to prefix/lib.<br/>
|<br/>
| if test "$libexecdir" = '${exec_prefix}/libexec' ; then<br/>
| libexecdir='${exec_prefix}/lib'<br/>
| fi<br/>
|<br/>
| # Continue with the standard behavior of configure defined in AC_SITE_LOAD:<br/>
| if test "x$prefix" != xNONE; then<br/>
| ac_site_file1=$prefix/share/config.site<br/>
| ac_site_file2=$prefix/etc/config.site<br/>
| else<br/>
| ac_site_file1=$ac_default_prefix/share/config.site<br/>
| ac_site_file2=$ac_default_prefix/etc/config.site<br/>
| fi<br/>
| for ac_site_file in "$ac_site_file1" "$ac_site_file2"<br/>
| do<br/>
| test "x$ac_site_file" = xNONE && continue<br/>
| if test /dev/null != "$ac_site_file" && test -r "$ac_site_file"; then<br/>
| { $as_echo "/usr/share/site/i686-pc-linux-gnu:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5<br/>
| $as_echo "/usr/share/site/i686-pc-linux-gnu: loading site script $ac_site_file" >&6;}<br/>
| sed 's/^/| /' "$ac_site_file" >&5<br/>
| . "$ac_site_file" \<br/>
| || { { $as_echo "/usr/share/site/i686-pc-linux-gnu:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5<br/>
| $as_echo "/usr/share/site/i686-pc-linux-gnu: error: in \`$ac_pwd':" >&2;}<br/>
| as_fn_error $? "failed to load site script $ac_site_file<br/>
| See \`config.log' for more details" "$LINENO" 5; }<br/>
| fi<br/>
| done<br/>
configure:1847: checking for gcc<br/>
configure:1874: result: gcc -std=gnu99<br/>
configure:2112: checking for C compiler version<br/>
configure:2119: gcc -std=gnu99 --version >&5<br/>
gcc (SUSE Linux) 4.7.1 20120723 [gcc-4_7-branch revision 189773]<br/>
Copyright (C) 2012 Free Software Foundation, Inc.<br/>
This is free software; see the source for copying conditions. There is NO<br/>
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.<br/>
<br/>
configure:2122: $? = 0<br/>
configure:2129: gcc -std=gnu99 -v >&5<br/>
Using built-in specs.<br/>
COLLECT_GCC=gcc<br/>
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i586-suse-linux/4.7/lto-wrapper<br/>
Target: i586-suse-linux<br/>
Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib --libexecdir=/usr/lib --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.7 --enable-ssp --disable-libssp --disable-libitm --disable-plugin --with-bugurl=<a href="http://bugs.opensuse.org/" target="_blank">http://bugs.opensuse.org/</a> --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --program-suffix=-4.7 --enable-linux-futex --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=i586-suse-linux<br/>
Thread model: posix<br/>
gcc version 4.7.1 20120723 [gcc-4_7-branch revision 189773] (SUSE Linux)<br/>
configure:2132: $? = 0<br/>
configure:2139: gcc -std=gnu99 -V >&5<br/>
gcc: error: unrecognized command line option '-V'<br/>
gcc: fatal error: no input files<br/>
compilation terminated.<br/>
configure:2142: $? = 1<br/>
configure:2165: checking for C compiler default output file name<br/>
configure:2192: gcc -std=gnu99 -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:2195: $? = 0<br/>
configure:2233: result: a.out<br/>
configure:2250: checking whether the C compiler works<br/>
configure:2260: ./a.out<br/>
configure:2263: $? = 0<br/>
configure:2280: result: yes<br/>
configure:2287: checking whether we are cross compiling<br/>
configure:2289: result: no<br/>
configure:2292: checking for suffix of executables<br/>
configure:2299: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:2302: $? = 0<br/>
configure:2326: result:<br/>
configure:2332: checking for suffix of object files<br/>
configure:2358: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:2361: $? = 0<br/>
configure:2384: result: o<br/>
configure:2388: checking whether we are using the GNU C compiler<br/>
configure:2417: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:2423: $? = 0<br/>
configure:2440: result: yes<br/>
configure:2445: checking whether gcc -std=gnu99 accepts -g<br/>
configure:2475: gcc -std=gnu99 -c -g conftest.c >&5<br/>
configure:2481: $? = 0<br/>
configure:2580: result: yes<br/>
configure:2597: checking for gcc -std=gnu99 option to accept ISO C89<br/>
configure:2671: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:2677: $? = 0<br/>
configure:2700: result: none needed<br/>
configure:2728: checking how to run the C preprocessor<br/>
configure:2768: gcc -std=gnu99 -E conftest.c<br/>
configure:2774: $? = 0<br/>
configure:2805: gcc -std=gnu99 -E conftest.c<br/>
conftest.c:8:28: fatal error: ac_nonexistent.h: No such file or directory<br/>
compilation terminated.<br/>
configure:2811: $? = 1<br/>
configure: failed program was:<br/>
| /* confdefs.h. */<br/>
| #define PACKAGE_NAME "rJava"<br/>
| #define PACKAGE_TARNAME "rjava"<br/>
| #define PACKAGE_VERSION "0.8"<br/>
| #define PACKAGE_STRING "rJava 0.8"<br/>
| #define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"<br/>
| /* end confdefs.h. */<br/>
| #include <ac_nonexistent.h><br/>
configure:2844: result: gcc -std=gnu99 -E<br/>
configure:2873: gcc -std=gnu99 -E conftest.c<br/>
configure:2879: $? = 0<br/>
configure:2910: gcc -std=gnu99 -E conftest.c<br/>
conftest.c:8:28: fatal error: ac_nonexistent.h: No such file or directory<br/>
compilation terminated.<br/>
configure:2916: $? = 1<br/>
configure: failed program was:<br/>
| /* confdefs.h. */<br/>
| #define PACKAGE_NAME "rJava"<br/>
| #define PACKAGE_TARNAME "rjava"<br/>
| #define PACKAGE_VERSION "0.8"<br/>
| #define PACKAGE_STRING "rJava 0.8"<br/>
| #define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"<br/>
| /* end confdefs.h. */<br/>
| #include <ac_nonexistent.h><br/>
configure:2954: checking for grep that handles long lines and -e<br/>
configure:3028: result: /usr/bin/grep<br/>
configure:3033: checking for egrep<br/>
configure:3111: result: /usr/bin/grep -E<br/>
configure:3116: checking for ANSI C header files<br/>
configure:3146: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3152: $? = 0<br/>
configure:3251: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3254: $? = 0<br/>
configure:3260: ./conftest<br/>
configure:3263: $? = 0<br/>
configure:3280: result: yes<br/>
configure:3290: checking for sys/wait.h that is POSIX.1 compatible<br/>
configure:3326: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3332: $? = 0<br/>
configure:3347: result: yes<br/>
configure:3371: checking for sys/types.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for sys/stat.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for stdlib.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for string.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for memory.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for strings.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for inttypes.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for stdint.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3371: checking for unistd.h<br/>
configure:3392: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3398: $? = 0<br/>
configure:3414: result: yes<br/>
configure:3433: checking for string.h<br/>
configure:3439: result: yes<br/>
configure:3443: checking sys/time.h usability<br/>
configure:3460: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3466: $? = 0<br/>
configure:3480: result: yes<br/>
configure:3484: checking sys/time.h presence<br/>
configure:3499: gcc -std=gnu99 -E conftest.c<br/>
configure:3505: $? = 0<br/>
configure:3519: result: yes<br/>
configure:3552: checking for sys/time.h<br/>
configure:3560: result: yes<br/>
configure:3433: checking for unistd.h<br/>
configure:3439: result: yes<br/>
configure:3575: checking for an ANSI C-conforming const<br/>
configure:3650: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
conftest.c: In function 'main':<br/>
conftest.c:51:10: warning: 't' is used uninitialized in this function [-Wuninitialized]<br/>
conftest.c:73:13: warning: 'cs[0]' is used uninitialized in this function [-Wuninitialized]<br/>
configure:3656: $? = 0<br/>
configure:3671: result: yes<br/>
configure:3681: checking whether time.h and sys/time.h may both be included<br/>
configure:3711: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3717: $? = 0<br/>
configure:3732: result: yes<br/>
configure:3743: checking whether gcc -std=gnu99 supports static inline...<br/>
configure:3761: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
conftest.c:3:8: warning: type defaults to 'int' in declaration of 'f' [enabled by default]<br/>
configure:3767: $? = 0<br/>
configure:3781: result: yes<br/>
configure:3792: checking whether setjmp.h is POSIX.1 compatible<br/>
configure:3820: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3826: $? = 0<br/>
configure:3841: result: yes<br/>
configure:3843: checking whether sigsetjmp is declared<br/>
configure:3873: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3879: $? = 0<br/>
configure:3894: result: yes<br/>
configure:3910: checking whether siglongjmp is declared<br/>
configure:3940: gcc -std=gnu99 -c -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables conftest.c >&5<br/>
configure:3946: $? = 0<br/>
configure:3961: result: yes<br/>
configure:3993: checking Java support in R<br/>
configure:4030: result: present:<br/>
interpreter : '/usr/bin/java'<br/>
archiver : '/usr/bin/jar'<br/>
compiler : '/usr/bin/javac'<br/>
header prep.: '/usr/bin/javah'<br/>
cpp flags : '-I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux'<br/>
java libs : '-L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm'<br/>
configure:4090: checking whether JNI programs can be compiled<br/>
configure:4108: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux conftest.c -L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm >&5<br/>
conftest.c: In function 'main':<br/>
conftest.c:4:13: warning: unused variable 'o' [-Wunused-variable]<br/>
configure:4114: $? = 0<br/>
configure:4120: result: yes<br/>
configure:4142: checking JNI data types<br/>
configure:4167: gcc -std=gnu99 -o conftest -fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux conftest.c -L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm >&5<br/>
configure:4170: $? = 0<br/>
configure:4176: ./conftest<br/>
./conftest: error while loading shared libraries: libjvm.so: cannot open shared object file: No such file or directory<br/>
configure:4179: $? = 127<br/>
configure: program exited with status 127<br/>
configure: failed program was:<br/>
| /* confdefs.h. */<br/>
| #define PACKAGE_NAME "rJava"<br/>
| #define PACKAGE_TARNAME "rjava"<br/>
| #define PACKAGE_VERSION "0.8"<br/>
| #define PACKAGE_STRING "rJava 0.8"<br/>
| #define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"<br/>
| #define STDC_HEADERS 1<br/>
| #define HAVE_SYS_WAIT_H 1<br/>
| #define HAVE_SYS_TYPES_H 1<br/>
| #define HAVE_SYS_STAT_H 1<br/>
| #define HAVE_STDLIB_H 1<br/>
| #define HAVE_STRING_H 1<br/>
| #define HAVE_MEMORY_H 1<br/>
| #define HAVE_STRINGS_H 1<br/>
| #define HAVE_INTTYPES_H 1<br/>
| #define HAVE_STDINT_H 1<br/>
| #define HAVE_UNISTD_H 1<br/>
| #define HAVE_STRING_H 1<br/>
| #define HAVE_SYS_TIME_H 1<br/>
| #define HAVE_UNISTD_H 1<br/>
| #define TIME_WITH_SYS_TIME 1<br/>
| #define HAVE_STATIC_INLINE 1<br/>
| #define HAVE_DECL_SIGSETJMP 1<br/>
| #define HAVE_DECL_SIGLONGJMP 1<br/>
| #define HAVE_POSIX_SETJMP 1<br/>
| /* end confdefs.h. */<br/>
|<br/>
| #include <jni.h><br/>
| int main(void) {<br/>
| return (sizeof(int)==sizeof(jint) && sizeof(long)==sizeof(long) && sizeof(jbyte)==sizeof(char) && sizeof(jshort)==sizeof(short) && sizeof(jfloat)==sizeof(float) && sizeof(jdouble)==sizeof(double))?0:1;<br/>
| }<br/>
|<br/>
configure:4189: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.<br/>
<br/>
## ---------------- ##<br/>
## Cache variables. ##<br/>
## ---------------- ##<br/>
<br/>
ac_cv_c_compiler_gnu=yes<br/>
ac_cv_c_const=yes<br/>
ac_cv_env_CC_set=<br/>
ac_cv_env_CC_value=<br/>
ac_cv_env_CFLAGS_set=<br/>
ac_cv_env_CFLAGS_value=<br/>
ac_cv_env_CPPFLAGS_set=<br/>
ac_cv_env_CPPFLAGS_value=<br/>
ac_cv_env_CPP_set=<br/>
ac_cv_env_CPP_value=<br/>
ac_cv_env_LDFLAGS_set=<br/>
ac_cv_env_LDFLAGS_value=<br/>
ac_cv_env_LIBS_set=<br/>
ac_cv_env_LIBS_value=<br/>
ac_cv_env_build_alias_set=<br/>
ac_cv_env_build_alias_value=<br/>
ac_cv_env_host_alias_set=<br/>
ac_cv_env_host_alias_value=<br/>
ac_cv_env_target_alias_set=<br/>
ac_cv_env_target_alias_value=<br/>
ac_cv_have_decl_siglongjmp=yes<br/>
ac_cv_have_decl_sigsetjmp=yes<br/>
ac_cv_header_inttypes_h=yes<br/>
ac_cv_header_memory_h=yes<br/>
ac_cv_header_stdc=yes<br/>
ac_cv_header_stdint_h=yes<br/>
ac_cv_header_stdlib_h=yes<br/>
ac_cv_header_string_h=yes<br/>
ac_cv_header_strings_h=yes<br/>
ac_cv_header_sys_stat_h=yes<br/>
ac_cv_header_sys_time_h=yes<br/>
ac_cv_header_sys_types_h=yes<br/>
ac_cv_header_sys_wait_h=yes<br/>
ac_cv_header_time=yes<br/>
ac_cv_header_unistd_h=yes<br/>
ac_cv_objext=o<br/>
ac_cv_path_EGREP='/usr/bin/grep -E'<br/>
ac_cv_path_GREP=/usr/bin/grep<br/>
ac_cv_prog_CPP='gcc -std=gnu99 -E'<br/>
ac_cv_prog_ac_ct_CC='gcc -std=gnu99'<br/>
ac_cv_prog_cc_c89=<br/>
ac_cv_prog_cc_g=yes<br/>
r_cv_header_setjmp_posix=yes<br/>
<br/>
## ----------------- ##<br/>
## Output variables. ##<br/>
## ----------------- ##<br/>
<br/>
CC='gcc -std=gnu99'<br/>
CFLAGS='-fomit-frame-pointer -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux'<br/>
CPP='gcc -std=gnu99 -E'<br/>
CPPFLAGS=''<br/>
DEFS=''<br/>
ECHO_C=''<br/>
ECHO_N='-n'<br/>
ECHO_T=''<br/>
EGREP='/usr/bin/grep -E'<br/>
EXEEXT=''<br/>
GREP='/usr/bin/grep'<br/>
JAVA='/usr/bin/java'<br/>
JAVAC='/usr/bin/javac'<br/>
JAVAH='/usr/bin/javah'<br/>
JAVA_CPPFLAGS='-I/usr/lib/jdk1.7.0_45/jre/../include -I/usr/lib/jdk1.7.0_45/jre/../include/linux'<br/>
JAVA_HOME='/usr/java/default'<br/>
JAVA_LIBS='-L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm'<br/>
LDFLAGS=''<br/>
LIBOBJS=''<br/>
LIBS=' -L/usr/lib/jdk1.7.0_45/jre/lib/i386/client -ljvm'<br/>
LTLIBOBJS=''<br/>
OBJEXT='o'<br/>
PACKAGE_BUGREPORT='Simon.Urbanek@r-project.org'<br/>
PACKAGE_NAME='rJava'<br/>
PACKAGE_STRING='rJava 0.8'<br/>
PACKAGE_TARNAME='rjava'<br/>
PACKAGE_VERSION='0.8'<br/>
PATH_SEPARATOR=':'<br/>
R_HOME='/usr/lib/R'<br/>
SHELL='/bin/sh'<br/>
WANT_JRI_FALSE=''<br/>
WANT_JRI_TRUE=''<br/>
ac_ct_CC='gcc -std=gnu99'<br/>
bindir='${exec_prefix}/bin'<br/>
build_alias=''<br/>
datadir='${datarootdir}'<br/>
datarootdir='${prefix}/share'<br/>
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'<br/>
dvidir='${docdir}'<br/>
exec_prefix='NONE'<br/>
host_alias=''<br/>
htmldir='${docdir}'<br/>
includedir='${prefix}/include'<br/>
infodir='${datarootdir}/info'<br/>
libdir='${exec_prefix}/lib'<br/>
libexecdir='${exec_prefix}/lib'<br/>
localedir='${datarootdir}/locale'<br/>
localstatedir='${prefix}/var'<br/>
mandir='${datarootdir}/man'<br/>
oldincludedir='/usr/include'<br/>
pdfdir='${docdir}'<br/>
prefix='NONE'<br/>
program_transform_name='s,x,x,'<br/>
psdir='${docdir}'<br/>
sbindir='${exec_prefix}/sbin'<br/>
sharedstatedir='${prefix}/com'<br/>
subdirs=''<br/>
sysconfdir='${prefix}/etc'<br/>
target_alias=''<br/>
<br/>
## ----------- ##<br/>
## confdefs.h. ##<br/>
## ----------- ##<br/>
<br/>
#define PACKAGE_NAME "rJava"<br/>
#define PACKAGE_TARNAME "rjava"<br/>
#define PACKAGE_VERSION "0.8"<br/>
#define PACKAGE_STRING "rJava 0.8"<br/>
#define PACKAGE_BUGREPORT "Simon.Urbanek@r-project.org"<br/>
#define STDC_HEADERS 1<br/>
#define HAVE_SYS_WAIT_H 1<br/>
#define HAVE_SYS_TYPES_H 1<br/>
#define HAVE_SYS_STAT_H 1<br/>
#define HAVE_STDLIB_H 1<br/>
#define HAVE_STRING_H 1<br/>
#define HAVE_MEMORY_H 1<br/>
#define HAVE_STRINGS_H 1<br/>
#define HAVE_INTTYPES_H 1<br/>
#define HAVE_STDINT_H 1<br/>
#define HAVE_UNISTD_H 1<br/>
#define HAVE_STRING_H 1<br/>
#define HAVE_SYS_TIME_H 1<br/>
#define HAVE_UNISTD_H 1<br/>
#define TIME_WITH_SYS_TIME 1<br/>
#define HAVE_STATIC_INLINE 1<br/>
#define HAVE_DECL_SIGSETJMP 1<br/>
#define HAVE_DECL_SIGLONGJMP 1<br/>
#define HAVE_POSIX_SETJMP 1<br/>
<br/>
configure: exit 1</div>
</div>
</div>
<hr/>
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